Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq496553 89.7 4e-13 seq1118728 84.2 2e-11 seq730927 84.2 2e-11 seq651746 84.2 2e-11 seq74577 84.2 2e-11 seq1532893 82.4 6e-11 >seq496553 Length=98900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 106247 TAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGA 106306 |||||| || || |||| || ||||| ||||| | ||||||||||| || || |||| Sbjct 47562 TAAGAGGTTGAA--TGCAGATCTTTGTCAAAACCCTCACTGGCAAGACTATCACTCTGGA 47505 Query 106307 AACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGT 106366 | || | ||| | ||| | || || |||||| ||||| |||||| | Sbjct 47504 AGTCGATAGCTCTGATACATTTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCAT 47445 Query 106367 GCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTAT 106426 ||| ||||||| || ||||| |||| ||| || ||||| | || || ||| | Sbjct 47444 TCCCCTTGATCAGCAGAGGCTGATTTTTGCCGGAAAACAGCTTGAGGACGGACGCACTCT 47385 Query 106427 GGGCGATTACAACATACAAAAAGAATCTACACTACA 106462 | ||||||||||| |||||||||||||| || || Sbjct 47384 TGCGGATTACAACATCCAAAAAGAATCTACTCTTCA 47349 >seq1118728 Length=17451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| ||||| | |||||||||||||| ||| ||||| ||| | Sbjct 1564 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCTTGGAAGTCGAAAGCTC 1623 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | ||| | | ||||| |||||| ||||| ||||| | || ||||| Sbjct 1624 TGACACAATTGACAATGTGAAGTCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCA 1683 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || ||||| |||| ||| || ||||| | || ||| ||| | | ||||||||| Sbjct 1684 GCAGAGGCTGATTTTTGCTGGAAAACAGCTCGAGGATGGACGCACTCTTGCCGATTACAA 1743 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| || || ||||| || || || Sbjct 1744 CATCCAGAAGGAATCGACTCTTCA 1767 >seq730927 Length=2450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| ||||| | |||||||||||||| ||| ||||| ||| | Sbjct 1395 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCTTGGAAGTCGAAAGCTC 1336 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | ||| | | ||||| |||||| ||||| ||||| | || ||||| Sbjct 1335 TGACACAATTGACAATGTGAAGTCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCA 1276 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || ||||| |||| ||| || ||||| | || ||| ||| | | ||||||||| Sbjct 1275 GCAGAGGCTGATTTTTGCTGGAAAACAGCTCGAGGATGGACGCACTCTTGCCGATTACAA 1216 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| || || ||||| || || || Sbjct 1215 CATCCAGAAGGAATCGACTCTTCA 1192 >seq651746 Length=18649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| |||| ||||||||||| ||| | ||| || | | Sbjct 12769 ATGCAAATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTCGAAGTTGAGAGCTCC 12828 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | |||||| || ||| ||||| ||||| | ||| | ||||| Sbjct 12829 GACACTATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAAGGGATTCCCCTAGATCAG 12888 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || || ||| | |||||| | ||| ||| ||||||||| Sbjct 12889 CAGAGATTGATCTTTGCTGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTACAAC 12948 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || || || || || || ||| Sbjct 12949 ATTCAGAAGGAGTCAACCCTGCAT 12972 >seq74577 Length=219802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| ||||| | |||||||||||||| ||| ||||| ||| | Sbjct 134609 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCTTGGAAGTCGAAAGCTC 134668 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | ||| | | ||||| |||||| ||||| ||||| | || ||||| Sbjct 134669 TGACACAATTGACAATGTGAAGTCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCA 134728 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || ||||| |||| ||| || ||||| | || ||| ||| | | ||||||||| Sbjct 134729 GCAGAGGCTGATTTTTGCTGGAAAACAGCTCGAGGATGGACGCACTCTTGCCGATTACAA 134788 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| || || ||||| || || || Sbjct 134789 CATCCAGAAGGAATCGACTCTTCA 134812 >seq1532893 Length=286854 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || ||||| |||||||| || || |||| || | | Sbjct 40203 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 40144 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||| ||||| | || |||||| Sbjct 40143 GATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 40084 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| || ||||| | || ||| |||| ||| |||||| ||| Sbjct 40083 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAAC 40024 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || || ||||||||||| || Sbjct 40023 ATCCAGAAGGAATCTACACTTCA 40001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393697354906112