Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq1422260 86.0 1e-11 seq1285380 84.2 5e-11 >seq1422260 Length=115997 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 332334 TCAGGTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCT 332393 || ||||| || || ||| ||||| | || ||||| || || ||||| ||| Sbjct 4609 TCGGGTACATTTCCTTCAACAATACCAATAGCTAGCCCTTCTGCAATGGCAGTTTTTCCT 4550 Query 332394 ACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCGAGCAAGAGTCTCAATC 332453 || || | |||||| |||||| | ||| ||||||||| ||||||||||| ||| || | Sbjct 4549 ACTCCTGGTTCACCTAAGAGAATTGGATTATTTTTGGTTCTGCGAGCAAGAATCTGAACC 4490 Query 332454 AATGCAGACAATTCTTTCTGGCGACCAATCATAGGATCTAGTTTGCCTTCTTTTGCAAGA 332513 | | ||| || | || ||||| |||||||||| ||| ||||| ||||| | Sbjct 4489 ACCCTTTCTACTTCCTTATCACGGCCAATAATAGGATCTATTTTCCCTTCACTTGCACGG 4430 Query 332514 GCAGT 332518 ||||| Sbjct 4429 GCAGT 4425 >seq1285380 Length=65969 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 332385 GTTTTACCTACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCGAGCAAGA 332444 ||||| ||||| || | |||||| |||||| | ||| ||||||||| ||||||||||| Sbjct 14807 GTTTTTCCTACTCCTGGTTCACCTAAGAGAATTGGATTATTTTTGGTTCTGCGAGCAAGA 14866 Query 332445 GTCTCAATCAATGCAGACAATTCTTTCTGGCGACCAATCATAGGATCTAGTTTGCCTTCT 332504 ||| || || | ||| || | || ||||| |||||||||| ||| ||||| Sbjct 14867 ATCTGAACCACCCTTTCTACTTCCTTATCACGGCCAATAATAGGATCTATTTTCCCTTCA 14926 Query 332505 TTTGCAAGAGCAGT 332518 ||||| | ||||| Sbjct 14927 CTTGCACGGGCAGT 14940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1088706902758272