Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1341871 114 1e-20 seq1692948 111 1e-19 seq224353 98.7 8e-16 seq236632 93.3 3e-14 seq1488072 84.2 2e-11 seq324985 84.2 2e-11 seq54299 82.4 6e-11 >seq1341871 Length=123413 Score = 114 bits (126), Expect = 1e-20 Identities = 187/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG-TTTTT 43946 |||||| ||| | | || || | ||||||||||| | ||| | || | ||| |||| Sbjct 12207 TGAAAACCTGGCTGGGCGTTTCATGAAAGAAGTTCAAGTTCCACAGGC-CCATGCATTTT 12265 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 ||||||| |||||| |||| ||||||||||| || | ||||||||| | ||| | || | Sbjct 12266 ATGGGTTCCAAATTTCCATTGAAAATATTCACTCAAAGATGTACAGTTTACTGTTGGAAA 12325 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTG 44066 | || |||||||| | || ||| ||| ||||| ||||| || || ||||| ||| Sbjct 12326 CATATGTCAAAGATCCTAAGGAAAAGAATCACTTGTTCAATGCAATTGAGACAGTTCCTT 12385 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 | | | |||||| | ||||| || || |||||| | ||| ||||| || Sbjct 12386 GTCTGGCAAAGAAAGCAAATTGGGCTCTCAACTGGATAGAGAGTGTTGAAAGTTTTGCAG 12445 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTG 44152 || | || |||| ||||| ||||| Sbjct 12446 AAAGTATTATCGCATTTGC--TTGTG 12469 >seq1692948 Length=159645 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||||| | ||| | || || |||||||||||| | |||||||| ||||||| Sbjct 120027 AAGAAGTTCAAGTTCCAAAGGCTCGTGCGTTTTATGGGTTTGAGATTGCCATTGAAAATA 120086 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 |||| || || ||||||||| | ||| | || || || |||||||| | || || Sbjct 120087 TTCACTCAGATATGTACAGTTTACTGTTGGAAACATATCTCAAAGATCCTAAGGAAAATA 120146 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 ||| ||||| | ||| || || ||||| ||| || | | |||||||| ||||| | Sbjct 120147 ATCACTTGTTCAGTGCAATTGAGACAGTTCCTAGTCTTGCAAAGAAAGCAGATTGGGCTC 120206 Query 44094 TTAAATGGATA 44104 | || | |||| Sbjct 120207 TCAACTAGATA 120217 >seq224353 Length=132916 Score = 98.7 bits (108), Expect = 8e-16 Identities = 171/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||| | || ||||| || ||||| | | ||| || || | || Sbjct 9013 GCATTCTTTGCTACATTTGATGGGATTGTTCTTGAAATCCTAGCTAGGCGTTTCATGAAA 9072 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||||||| | ||||| || || ||||||||||| || |||||||| ||||||||| Sbjct 9073 GAAGTTCAAGTTCCAGAGGCTCGTGCATTTTATGGGTTCCAGATTGCCATTGAAAATATT 9132 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || ||||| ||| | ||| | || || || |||||||| | || || || Sbjct 9133 CACTCAGAGATGTATAGTTTACTGTTGGAAACATATGTCAAAGATCCTAAGGAAAATAAT 9192 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 | | || ||||| || || ||| | ||| | | | |||| ||| ||||| || Sbjct 9193 CACCTATTCAATGCAATTGAGACAATTCCTTGTTTGGCAAAAAAAGAAGATTGGGCTCTC 9252 Query 44096 AAATGGATA 44104 || |||||| Sbjct 9253 AACTGGATA 9261 >seq236632 Length=228148 Score = 93.3 bits (102), Expect = 3e-14 Identities = 172/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| || ||||| || |||| | | ||| || || | || Sbjct 117508 GCATTCTTTGCTGCCTCTGATGGGATTGTTCTCAAAAACCTTGCTAGGCGTTTCATGAAA 117449 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||| ||||| | || | || || ||||||||||| || |||||||| ||||||||| Sbjct 117448 GAATTTCAAGTTTCAAAGGCTCGTGCATTTTATGGGTTCCAGATTGCCATTGAAAATATT 117389 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || ||||||||| | ||| | || || || |||||||| | || || || Sbjct 117388 CACTCAGAGATGTACAGTTTACTGTTGGAAACATATGTCAAAGATCCTAAGGAAAATAAT 117329 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTA-AACATAAAGCAGACTGGGCCCT 44094 | ||||| || || || || |||| || | || || | ||| |||| ||||| || Sbjct 117328 CACTTGTTCAAAGCAATTGAGGCAGT--TTGAGTCTAGAAAAAAAATCAGATTGGGCTCT 117271 Query 44095 TAAATGGATA 44104 || |||||| Sbjct 117270 CAACTGGATA 117261 >seq1488072 Length=30855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||||| | | ||| || || ||| ||||||| || |||||||| |||| || Sbjct 29188 AAGAAGTTCAAGTTCGAGAGGCTCGTGCATTTCATGGGTTCCAGATTGCCATTGAAAGTA 29247 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 |||| || || ||||| | | | ||| | || || || |||||||| | || || Sbjct 29248 TTCACTCAGAGATGTAAAATTTACTGTTGGAAACATATGTCAAAGATCCTAAGGA-AAAA 29306 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 ||| |||| ||||| || |||||||| || | | | |||||||| ||||| | Sbjct 29307 ATCACCTGTTCAATGCAATTGAAACAGT---TG-TCTGGCAAAGAAAGCAGATTGGGCTC 29362 Query 44094 TTAAATGGATA 44104 | || |||||| Sbjct 29363 TCAATTGGATA 29373 >seq324985 Length=9845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||||| | | ||| || || ||| ||||||| || |||||||| |||| || Sbjct 1494 AAGAAGTTCAAGTTCGAGAGGCTCGTGCATTTCATGGGTTCCAGATTGCCATTGAAAGTA 1435 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 |||| || || ||||| | | | ||| | || || || |||||||| | || || Sbjct 1434 TTCACTCAGAGATGTAAAATTTACTGTTGGAAACATATGTCAAAGATCCTAAGGA-AAAA 1376 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 ||| |||| ||||| || |||||||| || | | | |||||||| ||||| | Sbjct 1375 ATCACCTGTTCAATGCAATTGAAACAGT---TG-TCTGGCAAAGAAAGCAGATTGGGCTC 1320 Query 44094 TTAAATGGATA 44104 | || |||||| Sbjct 1319 TCAATTGGATA 1309 >seq54299 Length=354826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||||| |||||||| || || ||||| || || || |||||||||||| | Sbjct 292966 GCCATATTTTGGTTGAAGAAACGGGGCTTAATGCCAGGTTTAACTTTTTCAAATGAGCTG 292907 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || | ||||| || | ||||| ||||||||||| Sbjct 292906 ATTTCAAGAGATGAGGGTCTTCATTGTGATTTTGCTTG 292869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388928321186320