Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq335002 102 1e-16 >seq335002 Length=192544 Score = 102 bits (112), Expect = 1e-16 Identities = 340/526 (65%), Gaps = 5/526 (1%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 || || || ||||| | ||||| | ||| ||| || ||||| |||| || | ||| Sbjct 28373 GTATATTCAATAATCTTTGTGCAGAGGTTAGAAGATTTGATGGTTCCCAGATTTTGCTGA 28314 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||||||| ||||||| | ||||||||||| | || || || | || Sbjct 28313 TTGCTTTTTCTGTTACAGATATCCTTGAAGAGCATGTATGGATTTCCTGTTTCTATCTGA 28254 Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC 118930 | | ||||||| ||| | | || | ||| ||| || || ||||| Sbjct 28253 GCTTCCAGAATAGAAAACCAAAGCTTCTGTGCCTGT-ACAACCTTTTTTGCCTTACCCTC 28195 Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 || ||| || || |||| || ||||||| ||||||||| | || | ||||| || Sbjct 28194 TTGCTCATATTTCATGTACAGTTCTTCAAATTCTTCACCCCAGCAATCAGCAAGCCCGGG 28135 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 || | || || || || | | || | | | ||||| |||| ||||| ||||| Sbjct 28134 AGCTTCATTGGGACAAAATAATGTCCGTGTAGAATTCTCCTGGACCCTTTTCATAAAGAG 28075 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110 |||| | | ||| || || | || ||||| || | | ||||| | ||| || || Sbjct 28074 GTCTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTTCCCATGGTT 28015 Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170 | |||||||||||| || | | ||| || ||||| || || ||||||| || | Sbjct 28014 CTTTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTACATGGCAAA 27955 Query 119171 TGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACG 119227 || ||||| | | ||| | || | ||||| | ||||| | || ||||| | Sbjct 27954 TGCACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCT 27895 Query 119228 AAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 | |||||| | ||||||| ||| ||||| || || || ||| Sbjct 27894 CAACATTGGCACAATACCATTCGATGTACCATTAGTTCCTCGGATA 27849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604826038675840