Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1153735 114 1e-20 seq335002 113 5e-20 seq1275331 96.9 4e-15 seq1360730 84.2 2e-11 seq852098 84.2 2e-11 seq786183 84.2 2e-11 seq286074 84.2 2e-11 >seq1153735 Length=80411 Score = 114 bits (126), Expect = 1e-20 Identities = 306/456 (67%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || || || || | | || ||||||| |||||| | | || || || Sbjct 20409 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 20468 Query 9584 GCGATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || || |||| ||||| || ||| | ||||| |||||||| || || | ||| || || Sbjct 20469 GCAATCACAATGATACCAGTGTTCCCT-TCAAAGCCATCCATTTCGGTAAGAAGCTGATT 20527 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCA 9701 || |||||||| || |||||||| || | || |||| | | ||| | || | Sbjct 20528 AAGGGTTTGTTCTCGCTCATCATTTCCTCCACCTATT-CCAGTTCCTCTCTGCCTACCAA 20586 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | |||||||| ||||| | ||| || ||||| || |||||| || || || | Sbjct 20587 CTGCATCAATTTCATCCACGAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTGAACA 20646 Query 9762 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 | || || ||| || | || || | ||||||||||||||| ||||| | | | | Sbjct 20647 GGTCACG--CACTCTAGATGCTCCAATACCAACAAACATCTCAACAAACTCAGAACCTG- 20703 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | || | || ||| || ||| || ||| || |||||||| ||| || | |||||| | Sbjct 20704 AGATAGAGAAGAAAGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCC 20763 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | || ||||| |||| | || || | ||| ||||| || ||| || ||| Sbjct 20764 CAGTCCCTGGTGGACCCACCAGAAGAACTCCTTTAGGAATACGAGCTCCA--ACCGCAGT 20821 Query 9939 --ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | ||||| |||| ||| || || || || | ||| Sbjct 20822 AAACCTCTCTGGTTTCTTCAGGAACTCAACCACTTC 20857 >seq335002 Length=192544 Score = 113 bits (124), Expect = 5e-20 Identities = 525/825 (64%), Gaps = 9/825 (1%) Strand=Plus/Plus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA 104326 ||||||||||| | | | || ||| | ||||| ||| || ||| | || || Sbjct 27610 GACATTGATTCAGCTATCAAAACTTACCAGTTAATGTCACAACGTTGGTTTACCCATGCT 27669 Query 104327 ACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATC 104386 | || || || ||||||| ||| |||||||| || || || || ||||||||| | Sbjct 27670 TCTCCTACACTTTTCAATGTTGGGACACCAAGGCCACAGTTGAGTAGCTGCTTCCTTGTT 27729 Query 104387 GCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATC 104446 | || || || || | || || |||| ||||| | ||| ||||| ||| Sbjct 27730 TGTATGAAAGATGATAGCATTGAGGGGATATATGATACTCTAAAGGAATGTGCTGTAATA 27789 Query 104447 TCAAAGTGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCG 104505 || | ||||| || |||| | | || | ||| | | | || | | | Sbjct 27790 AGCAAATCAGCTGGAGGACTTGGTGTTTCAG-TACATAACATTCGTGCAACCAGTAGTTA 27848 Query 104506 TATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGC 104565 ||| || || || |||||| ||| |||||||| | |||||| | | ||||| || | Sbjct 27849 TATCCGAGGAACTAATGGTACATCGAATGGTATTGTGCCAATGTTGAGGGTATTCAATGA 27908 Query 104566 CACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAA---AGGGATCTATCGCAGTCTATCT 104622 || || || ||||| |||||| ||| | || |||| | | || | || || Sbjct 27909 TACTGCTCGTTATGTTGATCAAGGTGGAGGCAAAAGGAAGGGTGCATTTGCCATGTACCT 27968 Query 104623 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGA 104682 ||||||||||| || ||| | | ||||| | |||||| | ||||| || | || Sbjct 27969 AGAGCCATGGCATGCAGATGTTTTTGAGTTTTTGGAGTTGAGAAAGAACCATGGGAAGGA 28028 Query 104683 GGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 ||| | || ||||| || | || || ||| | | ||| ||||| ||||| || Sbjct 28029 AGAGAATAGAGCACGTGATCTATTTTTTGCACTTTGGGTGCTAGACCTCTTTATGAAAAG 28088 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 || |||||| | | || | | |||||||| | | || || || || | || Sbjct 28089 GGTCCAGGAGAATTCTACACGGACATTATTTTGTCCCAATGAAGCTCCCGGGCTTGCTGA 28148 Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 | | |||||| || ||||||| || |||| || || ||| |||| ||| ||| | Sbjct 28149 TTGCTGGGGTGAAGAATTTGAAGAACTGTACATGAAATATGAGCAAGAGGGTAAGGCAAA 28208 Query 104863 TGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | || ||| | || | | ||| ||||||| | |||| | || || | Sbjct 28209 AAAGGTTGT-ACAGGCACAGAAGCTTTGGTTTTCTATTCTGGAAGCTCAGATAGAAACAG 28267 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | ||||||||||| | ||| || ||||||| ||| || ||||| | ||| ||| Sbjct 28268 GAAATCCATACATGCTCTTCAAGGATATCTGTAACAGAAAAAGCAATCAGCAAAATCTGG 28327 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC-AGACAAAGATGAG 105040 | ||||| ||| || ||||| ||| | || | |||| ||| || | || | || Sbjct 28328 GAACCATCAAATCTTCTAACCTCTGCACAAAGATTATTGAATATACAAGTCCAATA-GAA 28386 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 || | || |||||| | ||||| || || || || | |||||| Sbjct 28387 ACAACAGTCTGTAACTTGGCATCTATTGCGCTGCCTAGATATGTG 28431 >seq1275331 Length=493391 Score = 96.9 bits (106), Expect = 4e-15 Identities = 242/360 (67%), Gaps = 17/360 (5%) Strand=Plus/Plus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTG 7340 || || || ||| | || |||||| ||||| | ||| || | ||||| ||| ||| Sbjct 58852 CCTCAGAATGAGAACACCCCCTTCCACCCAAGAA--GTCCTTATGCTGTCTCCAAGCTTG 58909 Query 7341 CGGCACATTGGC--TC-GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCG 7397 | || |||||| || ||||| |||| | || | || ||| ||||||| | | || Sbjct 58910 CAGCCCATTGGTATTCTGTCAA---TTACAGAGAAGCATATGGAATGTTTGCCTCCAACG 58966 Query 7398 GAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA 7457 | ||||||||||| || ||||| || || |||||| ||||||| |||| |||||| | Sbjct 58967 GGATCCTCTTCAATCACGAATCCCCAAGGAGAGGTGAGAACTTTGTGACAAGGAAGATCA 59026 Query 7458 CCGAGGGTATCAAACAAATCATGAAGGG---TGAAAAGGAGTTCATTGAATTGGGTAACA 7514 || || | | ||||| | || | | ||| ||| | | ||||| || Sbjct 59027 CCAGGGCTGTGGGGAGAATCAAAATTGGGCTTCAGAAGAAGT---TGTATTTGGGCAATC 59083 Query 7515 TAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGC 7574 | || || | || |||||||| || ||||||||| || || |||||| | ||| Sbjct 59084 TCAAGGCCTCCAGGGATTGGGGATTTGCTGGGGACTATGTGGAGGCAATGTGGTTGATGT 59143 Query 7575 TTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAG-TGAGG 7633 | || ||||| | |||| || || || || || || | ||| | |||||| | ||||| Sbjct 59144 TGCAGCAAGATAAGCCCGATGACTACGTTGTTGCCACTGATGATAGCCATACCGTTGAGG 59203 >seq1360730 Length=15079 Score = 84.2 bits (92), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 4858 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 4799 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 4798 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 4740 Query 9655 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9714 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 4739 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 4680 Query 9715 ATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACAC 9773 ||| ||||| | || || || |||||| | | ||| ||| ||||| || | | Sbjct 4679 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGAATCC 4621 Query 9774 GCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || || || ||||||||||| | ||| Sbjct 4620 TAGAGGCTCCTACTCCTACAAACATCTCTATAAA 4587 >seq852098 Length=18081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 10219 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 10278 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 10279 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 10337 Query 9655 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9714 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 10338 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 10397 Query 9715 ATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACAC 9773 ||| ||||| | || || || |||||| | | ||| ||| ||||| || | | Sbjct 10398 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGAATCC 10456 Query 9774 GCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || || || ||||||||||| | ||| Sbjct 10457 TAGAGGCTCCTACTCCTACAAACATCTCTATAAA 10490 >seq786183 Length=135185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 129744 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 129685 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 129684 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 129626 Query 9655 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9714 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 129625 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 129566 Query 9715 ATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACAC 9773 ||| ||||| | || || || |||||| | | ||| ||| ||||| || | | Sbjct 129565 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGAATCC 129507 Query 9774 GCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || || || ||||||||||| | ||| Sbjct 129506 TAGAGGCTCCTACTCCTACAAACATCTCTATAAA 129473 >seq286074 Length=7140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 2945 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 3004 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 3005 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 3063 Query 9655 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9714 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 3064 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 3123 Query 9715 ATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACAC 9773 ||| ||||| | || || || |||||| | | ||| ||| ||||| || | | Sbjct 3124 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGAATCC 3182 Query 9774 GCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || || || ||||||||||| | ||| Sbjct 3183 TAGAGGCTCCTACTCCTACAAACATCTCTATAAA 3216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570425679487360