Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1131483 100 3e-16 seq947068 100 3e-16 seq109809 100 3e-16 seq1078364 98.7 1e-15 seq311831 98.7 1e-15 seq1045474 96.9 4e-15 seq825899 96.9 4e-15 seq821712 96.9 4e-15 seq255880 96.9 4e-15 seq825306 95.1 1e-14 seq626083 95.1 1e-14 seq1195981 93.3 5e-14 seq152913 93.3 5e-14 seq364934 87.8 2e-12 >seq1131483 Length=52439 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 44029 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 43970 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| ||||||||| Sbjct 43969 TGAGCTATGAAAGCAAA 43953 >seq947068 Length=152406 Score = 100 bits (110), Expect = 3e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 16083 TGCTTTCAATGAGATTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16142 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 16143 TGAGCTATGAAAGCA 16157 >seq109809 Length=195475 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 91580 CTGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 91521 Query 79683 TTGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 91520 CTGAGCTATGAAAGCAA 91504 >seq1078364 Length=113925 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 97969 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 98028 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 98029 TGAGCTATGAAAGCAA 98044 >seq311831 Length=137606 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 89889 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 89830 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 89829 TGAGCTATGAAAGCAA 89814 >seq1045474 Length=143452 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 79421 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 79480 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 79481 TGAGCTATGAAAGCA 79495 >seq825899 Length=27612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 16831 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16890 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 16891 TGAGCTATGAAAGCA 16905 >seq821712 Length=27042 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 16972 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 17031 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 17032 TGAGCTATGAAAGCA 17046 >seq255880 Length=32428 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 2409 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2468 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 2469 TGAGCTATGAAAGCA 2483 >seq825306 Length=57023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 21356 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 21415 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 21416 TGAGCTATGAAAGCGAA 21432 >seq626083 Length=780252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/76 (88%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTA--CCAA 79682 ||||||| ||||| |||| ||||| |||||||||||||||||||||||||||| |||| Sbjct 440879 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCCAA 440938 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 440939 CTGAGCTATGAAAGCA 440954 >seq1195981 Length=500874 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT--ACCAA 79682 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 143608 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAAACCAA 143667 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 143668 CTGAGCTATGAAAGC 143682 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||| ||||||||||||||||||| ||||| Sbjct 58942 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCCCTTACTAAACGGGTGCTCTAACCAAC 58883 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 58882 TGAGCTATGAAAGC 58869 >seq152913 Length=102563 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 85732 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 85673 Query 79684 TGAGCTACGAAAG 79696 ||||||| ||||| Sbjct 85672 TGAGCTATGAAAG 85660 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/76 (86%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTA--CCAA 79682 ||||||| ||||| |||| |||| |||||||||||||||||||||||||||| | || Sbjct 1938 TGCTTTCAATGAGAGTTGAACTCACGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAA 1997 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 1998 CTGAGCTATGAAAGCA 2013 >seq364934 Length=108925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTACCAATT 79684 ||||||| ||||| |||| ||||| ||||||||||||||||||||||| | ||||| | Sbjct 45804 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTG-TTAACCAACT 45746 Query 79685 GAGCTACGAAAGCAA 79699 |||||| |||||||| Sbjct 45745 GAGCTATGAAAGCAA 45731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535174074147200