Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq230752 93.3 3e-14 seq728553 84.2 2e-11 seq1205411 82.4 6e-11 seq999842 82.4 6e-11 >seq230752 Length=20368 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 ||||||||| || | | ||| | ||||| || ||||| || |||||||||||||| | Sbjct 12142 TGCCGCCTCTCAGACGAAGCACAAGGTGCAGGGTCGATTCCTTCTGAATATTGTAATCAG 12201 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | |||||| | ||| ||||| ||| | |||||||| || ||||| || Sbjct 12202 CCAAAGTCCGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCAGGGG 12261 Query 101130 GCACGCCTTCTTTGTC 101145 | | |||||| ||||| Sbjct 12262 GTATGCCTTCCTTGTC 12277 >seq728553 Length=135983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||| || | | ||| | ||||| || ||||| || |||||||||||||| | Sbjct 38925 TGCCACCTCTCAGACGAAGCACAAGGTGCAGGGTCGATTCCTTCTGAATATTGTAATCAG 38866 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | |||||| | ||| || || ||| | |||||||| || ||||| || Sbjct 38865 CCAAAGTCCGGCCATCTTCAAGTTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCAGGGG 38806 Query 101130 GCACGCCTTCTTTGTC 101145 | | |||||| ||||| Sbjct 38805 GTATGCCTTCCTTGTC 38790 >seq1205411 Length=103332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||||| |||||| ||||| || || || ||||| |||| || |||||| Sbjct 99071 CACCAGGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTC 99012 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||| || || || ||| |||| | ||||||||||||| || | || || ||||| Sbjct 99011 CAACTGCTTACCAGCAAATATCAACCTTTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 98952 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || || ||||||| | | ||| |||| | | || | ||||| ||||| Sbjct 98951 GATCTTAGCCTTCACATTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTAATGGTTTT 98892 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || | ||||| | |||||||||||| Sbjct 98891 CCCAGTAAGGGTTTTCACAAAAATTTGCAT 98862 >seq999842 Length=17275 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||||| |||||| ||||| || || || ||||| |||| || |||||| Sbjct 3851 CACCAGGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTC 3910 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||| || || || ||| |||| | ||||||||||||| || | || || ||||| Sbjct 3911 CAACTGCTTACCAGCAAATATCAACCTTTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 3970 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || || ||||||| | | ||| |||| | | || | ||||| ||||| Sbjct 3971 GATCTTAGCCTTCACATTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTAATGGTTTT 4030 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || | ||||| | |||||||||||| Sbjct 4031 CCCAGTAAGGGTTTTCACAAAAATTTGCAT 4060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400871259208176