Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq511956 219 9e-53 >seq511956 Length=478 Score = 219 bits (242), Expect = 9e-53 Identities = 333/466 (71%), Gaps = 20/466 (4%) Strand=Plus/Minus Query 1764 GGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTGCTCGATGGCCTG 1823 ||||| || || ||||| |||||| ||||| ||||| || || || |||| ||| Sbjct 465 GGAACGCCACAGGGCGGCATCATCAGCCCTACATTGGCCAATGTGACACTGAATGGGCTG 406 Query 1824 GAATCACAGCT-CAAGCGACACCTGGGCGTGAC---AAGGGC--GAAGAA-GCTG----- 1871 || ||| || || || ||| || ||||| | |||| || ||| |||| Sbjct 405 GAGTCAGGACTGCACGC-ACATCTA--CGTGAGCGGATGGGCAAGACGAAAGCTGCGGGA 349 Query 1872 ---AAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAG 1928 ||| | ||||||||||| || ||||| |||||||||||||||||| ||| ||| Sbjct 348 CTCAAAGTAAATGTGGTGCGGTACGCGGATGACTTCGTCATCACCGGTAGCTCGAAGGAG 289 Query 1929 GTACTGGAGAAAGAAGTCAAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAG 1988 | |||||| | || ||||| || ||||| || |||||| | ||| || || | Sbjct 288 TTGCTGGAGGATGAGGTCAAGCCATGGGTGGAAGGGTTCCTCAAAGAACGAGGACTCGAA 229 Query 1989 CTCTCTCTGGAGAAAACGCGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGG 2048 || || ||||||| ||||| |||| ||||| | |||| ||||||||||| || ||| Sbjct 228 CTGTCGATGGAGAAGACGCGCATCGTGCACATCAACGAGGGTTTCGACTTCCTGGGCTGG 169 Query 2049 AACTTCCGCAAGTACAACGGGAAGCTTCTGATCAAACCCAGCCAGAAGAACGCGAAAGCG 2108 || ||||| ||||||| ||| ||| | || |||||||| ||| ||||||||| | || || Sbjct 168 AATTTCCGTAAGTACAGCGGAAAGATGCTCATCAAACCGAGCAAGAAGAACGAGCAATCG 109 Query 2109 TTCTACGGCAAGGTGAAGGAGGTCATCGAAACCAGCAGGACGGCAAGGCAAGAGGACTTG 2168 ||| ||||||| |||||||| ||| | || || ||||| | |||| | || || Sbjct 108 AACTATTGCAAGGTCAAGGAGGTTATCAGTAGCAACAAGACGGTACGGCAGTACGATCTG 49 Query 2169 ATCCGAAC-GCTGAATCCGATTCTGCGCGGCTGGGCGCTGTATCAC 2213 || ||| | |||||| || || ||||| || |||||| |||||| Sbjct 48 AT-CGACCTGCTGAACCCAATACTGCGAGGTTGGGCGAACTATCAC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102136004094432