Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1587993 201 1e-46 seq224353 127 2e-24 seq236632 120 3e-22 seq1488072 111 2e-19 seq324985 111 2e-19 seq54299 96.9 4e-15 seq1692948 91.5 2e-13 >seq1587993 Length=979 Score = 201 bits (222), Expect = 1e-46 Identities = 207/270 (77%), Gaps = 18/270 (7%) Strand=Plus/Minus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 859 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACTTCTGCCTCACG 800 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA---------GGC 8461 ||| ||||| ||| |||| ||||||||||| |||||||||| |||| | | Sbjct 799 GGTCCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGACTACACCACACTGGGAC 740 Query 8462 AAAA------GCCACCACGCCAAGCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCA 8514 | | ||||||| ||| ||||||||||| | ||||||||||| || || |||||| Sbjct 739 TACACCAGCTGCCACCATGCCTAGCTAATTTTTTGGATTTTTAGTAGTGACAGCGTTTCA 680 Query 8515 CCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTC 8574 | | ||||||||| |||||| || ||| | |||| |||||||| | ||||| |||||| Sbjct 679 CTGTATTGGCCAGGATGGTCTTGATCTCTTCACCT--TGTGATCCCCTTGCCTTGGCCTC 622 Query 8575 CCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 | || |||||||||||||||| ||||||| Sbjct 621 CAAATTTGCTGGGATTACAGGCCTGAGCCA 592 >seq224353 Length=132916 Score = 127 bits (140), Expect = 2e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 23730 AATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATC 23789 |||||| |||||||| || || || | | ||||| | | |||| | | |||||| || Sbjct 9219 AATTGTCTCAATTGCATTGAATAGGTGATTATTTTCCTTAGGATCTTTGACATATGTTTC 9160 Query 23790 AATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849 | |||||||||||||| || || |||||||||||||| |||||||| ||||||||||| Sbjct 9159 CAACAGTAAACTATACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAA 9100 Query 23850 ACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909 | ||| || | | |||||| || || | || | |||||| |||| ||| Sbjct 9099 TGCACGAGCCTCTGGAACTTGAACTTCTTTCATGAAACGCCTAGCTAGGATTTCAAGAAC 9040 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967 ||| |||||| | ||||||||| ||||| ||| | || || || | |||||| Sbjct 9039 AATCCCATCAAATGTAGCAAAGAATGCAAGGTCATGAGTGATGAAGTGCTTCTCATCA 8982 >seq236632 Length=228148 Score = 120 bits (132), Expect = 3e-22 Identities = 178/251 (71%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 23718 TTTTACACACTCAAT-TGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTG 23776 |||| | |||||| || ||||||||||| || | | | ||||| | | |||| Sbjct 117289 TTTTCTAGACTCAAACTGCCTCAATTGCTTTGAACAAGTGATTATTTTCCTTAGGATCTT 117348 Query 23777 TTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCT 23836 | | |||||| || | |||||||| ||||| || || |||||||||||||| ||||||| Sbjct 117349 TGACATATGTTTCCAACAGTAAACTGTACATCTCTGAGTGAATATTTTCAATGGCAATCT 117408 Query 23837 GAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTA 23896 | ||||||||||| | ||| | || | ||||| || || | || | |||| | Sbjct 117409 GGAACCCATAAAATGCACGAGCCTTTGAAACTTGAAATTCTTTCATGAAACGCCTAGCAA 117468 Query 23897 AATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAAT 23956 |||| | |||||| |||||| ||||||||||| ||||| |||| | || || | Sbjct 117469 GGTTTTTGAGAACAATCCCATCAGAGGCAGCAAAGAATGCAAGGACATGACTGATGAAGT 117528 Query 23957 GTCTTTCATCA 23967 | | |||||| Sbjct 117529 GCTTCTCATCA 117539 >seq1488072 Length=30855 Score = 111 bits (122), Expect = 2e-19 Identities = 156/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 23729 CAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTAT 23788 ||| |||||||||||| || || || | ||||||| | | |||| | | |||||| | Sbjct 29336 CAACTGTTTCAATTGCATTGAACAGGTGA-TTTTTTCCTTAGGATCTTTGACATATGTTT 29278 Query 23789 CAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAA 23848 | | |||||| | ||||| || || |||||| ||||||| |||||||| ||||||| || Sbjct 29277 CCAACAGTAAATTTTACATCTCTGAGTGAATACTTTCAATGGCAATCTGGAACCCATGAA 29218 Query 23849 AACATCTAGCTTCAGACAATTGAACATCATTAA--AAAATCTTTTAGCTAAATTTTCGTT 23906 | | ||| || | |||||| || || | |||| | ||||| |||||| Sbjct 29217 ATGCACGAGCCTCTCGAACTTGAACTTCTTTCATGAAAAAC--CCAGCTAGGTTTTCGAG 29160 Query 23907 AACAATACCATCACTAGCAGCAAAGAAAGCAAGAAC 23942 |||||| |||||| ||| ||||||| ||||| || Sbjct 29159 AACAATCCCATCAGAGGCAACAAAGAATGCAAGGAC 29124 >seq324985 Length=9845 Score = 111 bits (122), Expect = 2e-19 Identities = 156/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 23729 CAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTAT 23788 ||| |||||||||||| || || || | ||||||| | | |||| | | |||||| | Sbjct 1346 CAACTGTTTCAATTGCATTGAACAGGTGA-TTTTTTCCTTAGGATCTTTGACATATGTTT 1404 Query 23789 CAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAA 23848 | | |||||| | ||||| || || |||||| ||||||| |||||||| ||||||| || Sbjct 1405 CCAACAGTAAATTTTACATCTCTGAGTGAATACTTTCAATGGCAATCTGGAACCCATGAA 1464 Query 23849 AACATCTAGCTTCAGACAATTGAACATCATTAA--AAAATCTTTTAGCTAAATTTTCGTT 23906 | | ||| || | |||||| || || | |||| | ||||| |||||| Sbjct 1465 ATGCACGAGCCTCTCGAACTTGAACTTCTTTCATGAAAAAC--CCAGCTAGGTTTTCGAG 1522 Query 23907 AACAATACCATCACTAGCAGCAAAGAAAGCAAGAAC 23942 |||||| |||||| ||| ||||||| ||||| || Sbjct 1523 AACAATCCCATCAGAGGCAACAAAGAATGCAAGGAC 1558 >seq54299 Length=354826 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| |||||||||||||| || || ||||| || ||||| ||||| ||||| ||||| Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA 23612 ||||||||||| || ||||| || | ||||||||| ||| |||| Sbjct 292928 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGCA-CAAA 292971 >seq1692948 Length=159645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23730 AATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATC 23789 || ||| |||||||| | || | | | ||||| | | |||| | | |||||| || Sbjct 120175 AACTGTCTCAATTGCACTGAACAAGTGATTATTTTCCTTAGGATCTTTGAGATATGTTTC 120116 Query 23790 AATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849 | |||||||| ||||| || || |||||||||||||| ||||||| |||||||||||| Sbjct 120115 CAACAGTAAACTGTACATATCTGAGTGAATATTTTCAATGGCAATCTCAAACCCATAAAA 120056 Query 23850 ACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909 | ||| | | | |||||| || || | || ||| | |||||| ||| Sbjct 120055 CGCACGAGCCTTTGGAACTTGAACTTCTTTCATGAAATGCCCAGCCAGGTTTTCGAGAAC 119996 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAAC 23942 ||| | ||| |||||||||| ||||| || Sbjct 119995 AATCTCGTCAGAGACAGCAAAGAATGCAAGGAC 119963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510012239369600