Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq555823 102 8e-17 seq551685 96.9 4e-15 >seq555823 Length=1742627 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || || | |||||||||||||| | || |||| || || || | | |||| Sbjct 1008384 ATGGCATTGAACAGTTTCTCTTTTTCCTTGAAATCTCTTATGTAAGTTTCTAAAATTAGG 1008325 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||||||| || || || ||||| |||| |||||||| || || || || || Sbjct 1008324 TTGTACATTTCAGAATGAATATTCTCTATGGAAATCTGAAACCCATAGAATGCCCGAGCC 1008265 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 ||| |||||||| ||| |||||| | | |||| ||| || || || || || Sbjct 1008264 TCCAGGATTTGAACATCCTTCAAGAATCTTCCAGCTAAATTCTCCAAAACAATACCATCT 1008205 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT 17420 || || ||||| ||||| | ||| | ||||||| ||||||| Sbjct 1008204 GAGGCCGCAAAAAAGGCCAAAACATGGCTTATGAAATTCTTTTCGT 1008159 >seq551685 Length=11734 Score = 96.9 bits (106), Expect = 4e-15 Identities = 290/444 (65%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| || ||||| || ||| || || || |||||||| | ||| | |||||| ||| Sbjct 7069 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 7128 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || || || ||||||||| | |||| || || ||||| || || | ||| || || || Sbjct 7129 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 7188 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || || || | ||| || | ||| ||||| || | || || ||| | || ||||| Sbjct 7189 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCA 7248 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT----GCTTTATGCAATCCATCGT 17190 || |||||||| | |||| ||||| || | | ||| || || || Sbjct 7249 GCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATG----GT 7304 Query 17191 TTCTATGGCCTTAAATAAT--TTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGAT 17247 | ||||| || || || ||| |||| || |||| || | || || |||||||| Sbjct 7305 GTGAATGGCATTGAACAAGAATTCACTTT---CTTTAGGGTCCTTGATGTAGGTATCGAT 7361 Query 17248 GAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCA 17307 | | | ||| |||| ||||| || || || || || || || ||||| || | Sbjct 7362 CAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACT 7421 Query 17308 TCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGAT 17367 || || | ||||| ||||| | |||| ||| | | ||||| || || || Sbjct 7422 CTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 7481 Query 17368 GCCGTCGCTCGCGGCGAAAAACGC 17391 ||||| ||||||||||| || Sbjct 7482 ACCGTCAGAAGCGGCGAAAAAGGC 7505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509545218382200