Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq555823 125 7e-24 seq551685 96.9 3e-15 seq1017578 89.7 5e-13 seq443419 82.4 8e-11 >seq555823 Length=1742627 Score = 125 bits (138), Expect = 7e-24 Identities = 256/380 (67%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 16279 TTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGC 16338 |||||| ||||| || || ||| |||| || || || || |||||||||||| |||| Sbjct 1008535 TTTCTTCAACCAAAACATGGCACAAAATCTTCCAGAGAATAAAATACCCTCAACACATGC 1008476 Query 16339 AAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA 16398 ||| | | | || || | | | | || | | | |||||| | | |||| Sbjct 1008475 AAATGTAACAATTCTCTCGGAAAATGAACCAGAACTCTCA---ATCCATCGCAGGGCCCA 1008419 Query 16399 TTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC 16458 ||| ||||| | | ||| || || | ||||| || |||| |||||||||||| Sbjct 1008418 TTCAACTTTTCTTGCAACACAGCGAATAGTGTTGATGGCATTGAACAGTTTCTCTTTTTC 1008359 Query 16459 CTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTC 16518 || | ||| |||| || || || | | || |||||||||| || || || ||||| Sbjct 1008358 CTTGAAATCTCTTATGTAAGTTTCTAAAATTAGGTTGTACATTTCAGAATGAATATTCTC 1008299 Query 16519 TATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAA 16578 ||||| |||||||| |||||||| ||||||||| ||||| || ||| | || Sbjct 1008298 TATGGAAATCTGAAACCCATAGAATGCCCGAGCCTCCAGGATTTGAACATCCTTCAAGAA 1008239 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 || | | || | ||||| || ||||| || || |||||||| ||||| | || Sbjct 1008238 TCTTCCAGCTAAATTCTCCAAAACAATACCATCTGAGGCCGCAAAAAAGGCCAAAACATG 1008179 Query 16639 CTTAATGAAATATTTTTCGT 16658 | ||||||| ||||||| Sbjct 1008178 GCTTATGAAATTCTTTTCGT 1008159 >seq551685 Length=11734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 281/432 (65%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || |||||| || | ||||||||||| | ||| | |||||||||||| ||||| Sbjct 7078 CATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAA 7137 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| | |||| || || |||||||| || | ||||| || || || || || Sbjct 7138 CCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAG 7197 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 | ||| |||| || ||||| || | || || ||| | || || || | || Sbjct 7198 ACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA 7257 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTT----GTTTTATACAATCCATCGTTTCTATGGC 16437 |||||| | |||||||||| || | | ||| | || || | ||||| Sbjct 7258 ATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCT----GGGATGGTGTGAATGGC 7313 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 || ||||| || |||| | | || | || || ||||| |||| || ||| Sbjct 7314 ATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGTATCGATCAACAAGGAGTA 7373 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||| ||||| || || || || || || || || ||||| | ||||| | Sbjct 7374 AGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGG 7433 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 ||||| ||||| | | || ||| ||| ||| ||||| || ||||||||| || Sbjct 7434 AATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGC 7493 Query 16618 AGCAAAAAACGC 16629 || ||||| || Sbjct 7494 GGCGAAAAAGGC 7505 >seq1017578 Length=392639 Score = 89.7 bits (98), Expect = 5e-13 Identities = 215/322 (67%), Gaps = 5/322 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| | || || |||| || || || ||||| ||||| || |||||||||||| Sbjct 317549 AGACAAGTAAAATCATAATGAAGGCCCTCATCTCTTGAAATAAGATCATTGGAAAAAGTT 317608 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AA 16317 || ||| |||| || ||||||| ||||| ||||| ||| |||| | || || || Sbjct 317609 AAACCTTGCATCAAACCCTGTTTCTTCAACCAAAATATGGCA-CAAAAGCTTCCAAAGAA 317667 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| ||||||||||| ||||||| || | | || | || | | | || || Sbjct 317668 GAAACTACCCTCAACACATGCAAATGCAACAATTCTCTTGGCAAATGAACCAGAACCCTT 317727 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 ||||||| | | ||||||| ||||| | | ||| || || | ||||| Sbjct 317728 ---AATCCATCACAGGGCCCATTCAACTTTTCTTGCAACACAGGGAATAGTGTTGATGGC 317784 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 || |||| | || |||| |||| ||| |||| || || || | |||| |||| Sbjct 317785 ATTGAACAGTCTCACTTTCTCCTTGGAATCCCTTATGTAAGTTTCTAGAAGTAGGTTGTA 317844 Query 16498 CATTTCTGAGTGTATGTTCTCT 16519 |||||| | || || |||||| Sbjct 317845 CATTTCACAATGAATATTCTCT 317866 >seq443419 Length=851766 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || || || ||||| || || || ||||| ||||| || |||||||||||| Sbjct 697306 AGACAAGCAAAATCACAATGAAGGCCCTCATCTCTTGAAATAAGCTCATTGGAAAAAGTT 697247 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 || |||||||| || |||||||| ||||| ||||| ||| |||| Sbjct 697246 AAACCTGGCATCAAGCCCCGTTTCTTCAACCAAAATATGGCA-CAAA 697201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503508796387800