Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq976086 109 1e-19 >seq976086 Length=346 Score = 109 bits (120), Expect = 1e-19 Identities = 230/341 (67%), Gaps = 3/341 (1%) Strand=Plus/Minus Query 16116 CTGCGCGGCGTCAGTCTGGCGGCGGTGGCGCAGTCCGAGGTCGATGCGCTGATTAAGGTG 16175 ||||||||||| | ||||| | || ||||| || || || || ||| | | ||| Sbjct 346 CTGCGCGGCGTGCGCCTGGCCGACCTGTGCCAGTCGGACGTTGACGCCCTGCTCACCGTG 287 Query 16176 CTGCCCCGCATGACCTACCCGGCACTCACCACGCAGGAGCTCACCGCAATGAACCTGCCC 16235 ||||||||||| ||| || ||||| || | | ||| | || | | | | Sbjct 286 CTGCCCCGCATTACCCTGCCAGCACTGACAAAGGCCGAGTGTAATGCTCTTGATCCGGTA 227 Query 16236 GATATGCTGTCGCTGGCCGCTAAGGTGATTGGTTTTTTGTCACCGGCTTCGGCGGAATAG 16295 || || | |||||| || |||||||| ||||||||| || |||| |||||| Sbjct 226 GACCTGATTGCGCTGGGCGGAAAGGTGATCGGTTTTTTGCAGTCGAAGTCGGACGAATAG 167 Query 16296 ACTTCCCGCCCGGCCTGTCGACCGATGACCTGATGGCGGATATCGCAGTGATATTCCACT 16355 ||| |||| ||||||| || | | ||||||||||| ||||| || ||||||| |||| Sbjct 166 ACTGGCCGCACGGCCTGACGGTCAACGACCTGATGGCCGATATTGCCATGATATTTCACT 107 Query 16356 GGCCGCCATCAGAGCTCTATTCCCTGAGCCTGACCGAGCTCATCACATGGCGCGAAAAGG 16415 ||| || || ||| | || | || ||| ||||||| || ||||| | || | Sbjct 106 GGCAACCCTCCGAGATGTACGACATGCCGCTGGCCGAGCTGATTGACTGGCGGCATAAAG 47 Query 16416 CGCTGCAGCGTAGCGGA--AACCAC-AATGAGTAATAACCT 16453 | | || |||||| |||| | ||||| |||||||| Sbjct 46 CCTTTATCCGAAGCGGAGCAACCCCGGATGAGCAATAACCT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96437863843780