Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq627541 172 4e-39 >seq627541 Length=324 Score = 172 bits (190), Expect = 4e-39 Identities = 222/301 (74%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 5447 CTTTTGCCGCTGCCGCCGGGACCGGTCACCTCCAGAAAGAGCTGCCAGTCGTAGCGGTTT 5506 ||||| |||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||| Sbjct 6 CTTTTACCGCTGCCGCCGGGGCCGGTCACCTCAAGAAACATCTGCCAGTCATAGCGGTTT 65 Query 5507 GCCAGCACCATAAACAGTGCAGCCAGAATCACGTCGCGTTTTTCCGCACGGCCACCGGCG 5566 |||||||||||||| | || || || || || | || || | |||||| Sbjct 66 GCCAGCACCATAAATAACGCCGCGAGGATGCGCTCCTGCTTGTCGTGATTATGCCCGGCG 125 Query 5567 GCACG-GTCAAGCCAGCGCCAGAAGGCGGGGGCGTGGGTTTCCAGCGTTTCACCGTCCAC 5625 || || || || |||||||||||| || ||||||||| | | || ||||||| Sbjct 126 GCCCGCGTTAA-CCAGCGCCAGAATGCCGGGGCGTGGTCTGCGAGGTTTTCACCCGGACG 184 Query 5626 CGGCGGGGTGAAATCCACATCGCACAGGGTGCGCATCCAGTG-TGACGGACTGTGCGGGT 5684 ||| | |||| | ||||| | | |||||||| |||||| | ||| | |||||| Sbjct 185 CGGGGCGGTGTAGTCCACGCTGTTAACGGTGCGCAGCCAGTGCTCGCGG-CGGTGCGGAC 243 Query 5685 GGAACGTGCCGTTCTGCGTGTCGAGCACGCCGTTACGAAAGCCAATCAGGCGGCGGGAGG 5744 |||||||||| | || || | ||||||||||| ||||| |||||||||||||| | Sbjct 244 TGAACGTGCCGGTAGCTGTATCAAATACGCCGTTACGGAAGCCGATCAGGCGGCGGGACG 303 Query 5745 G 5745 | Sbjct 304 G 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36565702935280