Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_001706.1 Length=22172 Score E Sequences producing significant alignments: (Bits) Value seq482539 86.0 9e-13 >seq482539 Length=482 Score = 86.0 bits (94), Expect = 9e-13 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 5405 TTTAGGTTTGTTTCCTGTGGGGTCTATGATTTGGAATTGGTCCGCTACATAACCCAGACA 5464 || ||||| ||| || |||||||| || || | || ||||||||||| | | | Sbjct 201 TTCAGGTTCTTTTTTGGTTGGGTCTATCATCAAAAACTTGTTAGCTACATAACCAAAATA 142 Query 5465 AACCTCTTTGTCATAAGCGTAGTTACGAGCCTCAACAGTTAAAATTGAATACTTGCTATT 5524 || ||| | ||| | || | || ||| |||| || | || || ||| || || Sbjct 141 AAGTTCTCTATCAAATGCAAAATTCCGACCCTCTACGCTCAATATACTATATTTTGAATG 82 Query 5525 CTTTCCCATTTTAGG-GCTAAGACATAAACAGAACTCAAACCATGCACCAATTGCCGAAC 5583 |||||| || || || | ||| | |||||| ||||||||||| ||||| | ||| || Sbjct 81 CTTTCCAATCTTTGGTGACAAGTC-TAAACAAAACTCAAACCAAGCACCCAATGCAGATG 23 Query 5584 TACCTAAGGCATGTGTACTTC 5604 |||||| ||||||||||||| Sbjct 22 AACCTAAAGCATGTGTACTTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 69819177548325