Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1192815 118 9e-22 seq1122789 91.5 1e-13 seq842679 91.5 1e-13 seq661658 91.5 1e-13 seq434543 89.7 4e-13 seq679059 86.0 5e-12 seq878211 84.2 2e-11 seq510363 84.2 2e-11 >seq1192815 Length=22216 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| |||| || || || || || || |||||| ||| ||| | Sbjct 9881 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 9940 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | || ||||| || || || || |||||| | || || Sbjct 9941 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 10000 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | |||||||| || || |||||||||||| | |||| || |||| ||| Sbjct 10001 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 10060 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||||||||| ||| |||| || |||| |||| || Sbjct 10061 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 10110 >seq1122789 Length=489025 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| ||||||| |||||||||| ||||| || ||| || | Sbjct 336743 ATGCAAATATTTGTCAAAACGCTGACGGGCAATACCATCACGCTTGAAGTTGAGAGCTAC 336684 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| ||||| || || | || |||||| Sbjct 336683 GACACTATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCTCCGGATCAA 336624 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| || || ||| | |||||| | ||| |||||||||||||| Sbjct 336623 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGAGGACTCTGGCCGATTACAAT 336564 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||| |||||||||||||| || Sbjct 336563 GTTCAGAAGGAATCTACTCTGCA 336541 >seq842679 Length=263869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| |||| ||||| ||||| || ||| || | | Sbjct 131446 ATGCAAATCTTTGTCAAAACGCTGACCGGCAAGACCATCACGCTTGAAGTTGAGAGCTCT 131387 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| |||||| || |||||||| | || |||||| Sbjct 131386 GATACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 131327 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || || ||||| ||||| ||||| || | || ||| || || ||| || ||||||| Sbjct 131326 CAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGAACACTT--GCTGATTACA 131269 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 25263 | ||||| ||||||||||| || ||| | || || || || || || |||| Sbjct 131268 ACATTCAGAAGGAATCTACCCTCCACCTTGTCTTGCGTTTGCGTGGTGGGT 131218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| ||||| | || || ||||| || || ||||| || || ||| | Sbjct 132589 AAGATGCAGATATTTGTGAAGACGTTGACCGGAAAGACCATCACTCTTGAGGTGGAGAGC 132530 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | | | | ||| || ||| || ||||| || | ||| ||| Sbjct 132529 TCAGATACCATTGACAACGTTAAGTCGAAGATTCAGGACAAAGAGGGAATTCCCCCTGAT 132470 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||| || || || ||||| ||||| || ||||||| | |||| | || |||||| Sbjct 132469 CAACAGAGGCTCATATTTGCCGGCAAGCAGCTGGAAGACGGCCGAACTCTCGCTGATTAC 132410 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| |||||||| ||||||||| | ||| | || | ||||||| Sbjct 132409 AATATTCAGAAGGAATCCACTCTTCACCTCGTGCTCCGTCTCAGAGGAGG 132360 >seq661658 Length=5917 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| || || || ||||| ||||| || |||||||| | ||| | |||||| Sbjct 3986 GATCAACAGAGGCTCATATTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCGCCGAT 3927 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||| |||||||| ||||||||| |||| Sbjct 3926 TACAATATTCAGAAGGAATCCACTCTTCACCTGGT 3892 >seq434543 Length=395133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| || ||||| |||||||||||||| ||||| || |||| Sbjct 121710 GACAAGGAAGGTATACCCCCCGACCAACAGAGACTTATCTTTGCCGGCAAGCAGCTGGAG 121651 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || || |||| |||||||||||||| |||||||| || || ||| | ||| Sbjct 121650 GATGGCAGGACCTTGGCTGATTACAATATTCAGAAGGAATCAACCCTGCACCTTGTG 121594 >seq679059 Length=136279 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| || | || ||||| ||||| || |||||||| | ||| | |||||| Sbjct 119100 GATCAACAGAGGTTCATATTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCGCCGAT 119159 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||| |||||||| ||||||||| |||| Sbjct 119160 TACAATATTCAGAAGGAATCCACTCTTCACCTGGT 119194 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||||| ||||| ||||| ||||| || |||| ||| |||| | || ||| Sbjct 120678 GATCAGCAAAGGCTTATTTTTGCTGGCAAGCAGCTGGAGGATGGTCGAACTCTTGCTGAT 120737 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 25263 ||||| ||||| ||||||||||| || ||| | || || || || || || |||| Sbjct 120738 TACAACATTCAGAAGGAATCTACCCTCCACCTTGTCTTGCGTTTGCGTGGTGGGT 120792 >seq878211 Length=3116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25048 TCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCG 25107 |||| || ||||| || || ||||| || ||| ||| | | || || | | | Sbjct 1091 TCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACA 1150 Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || ||||| ||| ||| || || |||||| | || || ||||||||| | |||| Sbjct 1151 ATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 1210 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| || || ||||||||||| | ||| || | || ||||| |||||||| |||| Sbjct 1211 TTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAAT 1270 Query 25228 CTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | ||| | ||| | || || |||| |||| || Sbjct 1271 CCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 1304 >seq510363 Length=735265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| || | ||| | |||||||| || || || ||||| ||||| | |||||| Sbjct 713903 GACAAAGAGGGAATTCCCCT-GATCAACAGAGGCTCATATTTGCTGGCAAGTAGTTGGAA 713961 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || | ||| | ||||||||||| ||||| |||||||| ||||||||| |||| Sbjct 713962 CATGGCCGAACCCTCGCCGATTACAACATTCAGAAGGAATCCACTCTTCACCTGGT 714017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404605330324310