Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1192815 113 7e-20 seq184199 107 3e-18 seq679059 102 1e-16 seq1122789 95.1 2e-14 seq456869 93.3 6e-14 seq1193952 89.7 8e-13 seq878211 89.7 8e-13 seq678061 89.7 8e-13 seq16451 89.7 8e-13 >seq1192815 Length=22216 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| |||| ||||||||| || || || || || || Sbjct 10110 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 10051 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || ||||| || |||||||| ||||||||||| || || || ||| Sbjct 10050 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 9991 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||| ||| Sbjct 9990 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 9931 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || || || ||||| ||||| || || | ||| |||||||| || Sbjct 9930 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 9881 >seq184199 Length=30872 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||||||||| ||||| || || || || || || Sbjct 27286 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 27227 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 27226 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 27167 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 27166 ATACCTTCCTTGTCTTG 27150 >seq679059 Length=136279 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | ||||||||| || | || || ||||| | ||||| || | ||| || | ||| Sbjct 120484 ATGCAGAGTAGATTCCTTCTAAATGTTGTAATCGGCCAGAGTCCTCCCATCTTCAAGTTG 120425 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| |||||||| |||||||||||||||||||| || ||||| || Sbjct 120424 CTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGAATTCCCTCCTTATCCTG 120371 >seq1122789 Length=489025 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || || | || | ||| | ||||||||| || | ||| ||||| | Sbjct 336517 CCACCACGGAGGCTAAGGACGAGATGCAGAGTAGATTCCTTCTGAACATTGTAATCGGCC 336576 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | ||| ||||||||||| |||||||| || |||||||||||| Sbjct 336577 AGAGTCCTCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGTTGATCCGGAGGA 336636 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || ||||| || Sbjct 336637 ATTCCCTCCTTATCCTG 336653 >seq456869 Length=1137902 Score = 93.3 bits (102), Expect = 6e-14 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 146075 TGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 |||| || |||| ||| || ||||| ||||||| |||||| || | ||| || | ||| Sbjct 917925 TGTAGGGTCGATTGCTTCTGA-ATATTGTAATCTGCAAGAGTCCTTCCATCTTCAAGTTG 917867 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTAT 146183 || ||||| || ||||| ||||||||||| ||||||||||| ||||||| Sbjct 917866 CTTCCCAGCGAATATCAACCTTTGCTGATCTGGAGGAATTCCCTCTTTAT 917817 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || |||| ||| || || | ||| || | ||| ||||||||||| ||||| || Sbjct 918132 ATATTGTAGTCTGCAAGTGTCCTTCCATCTTCAAGTTGCTTTCCAGCAAATATCAACCTC 918073 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||| |||||||| || Sbjct 918072 TGCTGATCTGGAGGAATTCCCTCTTTATCCTG 918041 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||| | |||||||||||||| | | ||| || | ||| || |||||||| || || || Sbjct 918360 ATACTGTAATCTGAAAGAGTCATTCCATCTTCAAGTTGCTTCCCAGCAAATATTAACCTC 918301 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||| |||||||| || Sbjct 918300 TGCTGATCTGGAGGAATTCCCTCTTTATCCTG 918269 >seq1193952 Length=303220 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | || | |||| ||| ||||| || ||||| || || | | Sbjct 185175 CCACCTCTCAGTCGGAGCACTAGGTGTAGAGTGGATTCCTTCTGAATATTGTAGTCGGCA 185116 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || ||||| || ||||| ||||| ||||| | ||||||||||| ||| Sbjct 185115 AGGGTTCTGCCGTCTTCTAACTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGGGGA 185056 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 185055 ATACCTTCCTTGTCCTG 185039 >seq878211 Length=3116 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || || || ||||| |||||||| || || || || || Sbjct 1304 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 1245 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 1244 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 1185 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 1184 ATACCTTCCTTGTCTTG 1168 >seq678061 Length=572976 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | || | |||| ||| ||||| || ||||| || || | | Sbjct 353171 CCACCTCTCAGTCGGAGCACTAGGTGTAGAGTGGATTCCTTCTGGATATTGTAGTCGGCA 353112 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || ||||| || ||||| ||||| ||||| | ||||||||||| ||| Sbjct 353111 AGGGTTCTGCCGTCTTCTAACTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGGGGA 353052 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 353051 ATACCTTCCTTGTCCTG 353035 >seq16451 Length=660335 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | || | || | ||||||||| || ||||| || || | | Sbjct 128218 CCACCTCTCAGTCGGAGCACTAGGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCGGCA 128277 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || ||||| || ||||| ||||| ||||| | ||||||||||| ||| Sbjct 128278 AGGGTTCTGCCGTCTTCTAACTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGGGGA 128337 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 128338 ATGCCTTCCTTGTCCTG 128354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732032736556800