Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq555823 86.0 6e-12 >seq555823 Length=1742627 Score = 86.0 bits (94), Expect = 6e-12 Identities = 269/416 (65%), Gaps = 3/416 (1%) Strand=Plus/Minus Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 ||||| || | || | ||| || | |||||| || || |||| ||||| || || Sbjct 1008552 CCTGGAATCAAGCCCCATTTCTTCAACCAAAACATGGCACAAAATCTTCCAGAGAATAAA 1008493 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 ||||| ||||| ||||||| ||| | || ||| | | | | ||| || Sbjct 1008492 ATACCCTCAACACATGCAAATGTAACAATTCTCTCGGAAAATGAACCAGA---ACTCTCA 1008436 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 |||||| ||||| | ||||| | ||||||| || | | || ||||| Sbjct 1008435 ATCCATCGCAGGGCCCATTCAACTTTTCTTGCAACACAGCGAATAGTGTTGATGGCATTG 1008376 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | |||||| ||| |||| || ||||| |||| | || | |||||| Sbjct 1008375 AACAGTTTCTCTTTTTCCTTGAAATCTCTTATGTAAGTTTCTAAAATTAGGTTGTACATT 1008316 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || |||||||||||||| || | |||||||| ||||| || | ||| || ||| Sbjct 1008315 TCAGAATGAATATTCTCTATGGAAATCTGAAACCCATAGAATGCCCGAGCCTCCAGGATT 1008256 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || | || ||| | ||||| || || ||| || ||||| || ||| Sbjct 1008255 TGAACATCCTTCAAGAATCTTCCAGCTAAATTCTCCAAAACAATACCATCTGAGGCCGCA 1008196 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCA 16710 ||||| || | | || | || ||||| |||||||||| | || |||| ||| Sbjct 1008195 AAAAAGGCCAAAACATGGCTTATGAAATTCTTTTCGTTATTAGTGAGGTTTACCCA 1008140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455362344969000