Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1192815 107 1e-18 seq878211 102 6e-17 seq842679 98.7 7e-16 seq1236130 96.9 3e-15 seq458253 96.9 3e-15 seq434543 89.7 4e-13 seq753218 86.0 5e-12 >seq1192815 Length=22216 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 10092 ACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 10033 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 10032 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 9973 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 9972 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTA 9913 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 9912 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 9881 >seq878211 Length=3116 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||||||||| | || ||| ||| ||||||||||| || || Sbjct 1274 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 1215 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | ||||||||| || || | |||||||| || ||| | | |||| Sbjct 1214 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 1155 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | |||||| | || || ||||| || Sbjct 1154 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 1095 Query 18309 TTTACAAAA 18317 || |||||| Sbjct 1094 TTGACAAAA 1086 >seq842679 Length=263869 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| || || ||||| || ||||||||||| || || | |||| || ||| || | || Sbjct 131243 GTGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGCAAGTGTTCGACCATCCTCAAGCTG 131302 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||||| ||| | ||||| || |||||||| || | |||||| || || ||||| Sbjct 131303 CTTGCCAGCAAAAATAAGCCTCTGTTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTT 131362 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| || ||| | ||| ||||| |||||| | |||||||| Sbjct 131363 AGCCTTCACATTATCAATCGTATCAGAGCTCTCAACTTCAAGCGTGATGGTCTTGCCGGT 131422 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| |||||||| Sbjct 131423 CAGCGTTTTGACAAAGATTTGCAT 131446 >seq1236130 Length=574753 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || |||||||| || ||||||||||| ||||||| || || ||| Sbjct 402173 AAGAACAAGGTGCAGGGTTGATTCCTTCTGAATGTTGTAATCGGCCAACGTCCGACCATC 402232 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||| || ||||| ||| | || || || || || ||| ||| | ||||||||| || Sbjct 402233 CTCCAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTC 402292 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| ||||| | ||| ||| | |||||| | Sbjct 402293 CTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAGGTGATCGT 402352 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | ||||| |||||||| ||||| Sbjct 402353 CTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 402385 >seq458253 Length=694718 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || |||||||| || ||||||||||| ||||||| || || ||| Sbjct 118770 AAGAACAAGGTGCAGGGTTGATTCCTTCTGAATGTTGTAATCGGCCAACGTCCGACCATC 118829 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||| || ||||| ||| | || || || || || ||| ||| | ||||||||| || Sbjct 118830 CTCCAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTC 118889 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| ||||| | ||| ||| | |||||| | Sbjct 118890 CTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAGGTGATCGT 118949 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | ||||| |||||||| ||||| Sbjct 118950 CTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 118982 >seq434543 Length=395133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | ||| |||| ||| || || ||||||||||| ||||||||||||||| Sbjct 384631 CCTCCCCTCAGACGAAGAACCAGGTGCAGAGTAGATTCTTTTTGGATGTTGTAGTCGGCC 384690 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || || |||| || || || || ||||||| ||||| || || ||| Sbjct 384691 AGGGTTCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCTGGGGGA 384750 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | ||| || | | | |||||| |||| | Sbjct 384751 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAACTCTCGACT 384810 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || || |||| ||||| ||||| || ||||| Sbjct 384811 TCCAAAGTGATTGTCTTTCCCGTCAGGGTTTTGACAAATATCTGCAT 384857 >seq753218 Length=1074133 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| ||||| ||||| || ||||||||||| |||||| Sbjct 399573 CCACCCCTGAGACGAAGGACGAGGTGCAGTGTGGATTCCTTCTGAATGTTGTAATCGGCC 399632 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || ||||| || || || |||| || || || || ||| ||| Sbjct 399633 AAAGTCCGGCCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 399692 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||| | ||| || | ||| ||||| | ||| | Sbjct 399693 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTATCAATGGTGTCTGAGCTCTCAACT 399752 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || || |||| ||||| |||||||||||||| Sbjct 399753 TCCAAAGTGATCGTCTTCCCAGTCAGGGTTTTAACAAAAATTTGCAT 399799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 373626582355425