Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq551685 120 6e-22 seq1178007 84.2 4e-11 seq710657 84.2 4e-11 seq675712 84.2 4e-11 seq342775 84.2 4e-11 >seq551685 Length=11734 Score = 120 bits (132), Expect = 6e-22 Identities = 296/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| | ||||||| |||| || ||| | || || |||||||||||| Sbjct 7223 GTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGG 7164 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||||| |||| ||| | |||| ||||| || || || | ||| ||| Sbjct 7163 TTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGAC 7104 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||||||| || |||| | |||| || | | Sbjct 7103 GAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---ACAA 7051 Query 102098 TCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || || ||| |||||||||| || || || |||||||||| || Sbjct 7050 ACCAGACCCAGCCATCGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATA 6991 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | || | || ||| || | || |||||| | || |||| ||| || Sbjct 6990 CTTCTTGGACGCCTTACCAGTTGCTTTGCTAGGTATGAACGCTGACTTAATGAACCAATA 6931 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271 | |||| || || || || | ||| ||||| | | || || ||||| |||| || Sbjct 6930 CGTTGAGTTCGTCGCCGACAGACTGTTGGTCGCTTTCGGTAACAAGAAA--TACTACAAG 6873 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || ||||||||| |||||||| || || ||| | | |||||| ||||| || Sbjct 6872 GTCGAAAACCCCTTCGATTTCATGGAAAACATCTCCTTGGCCGGTAAGACTAACTTCTTC 6813 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 6812 GAAAAGAGAGTTTCTGACTACCAA 6789 >seq1178007 Length=137947 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || || ||| | ||||| || || | |||||||||| || | ||||||||| ||||| Sbjct 95676 ATCTTTTGGCTGAAGAAAAGAGGACTGATGCCTGGTCTAACATTTTCCAATGAGCTCATT 95735 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 || || || |||||||| ||| | |||||||||||| |||| Sbjct 95736 TCAAGAGATGAAGGTCTCCATTGTGACTTTGCATGCTTGCT 95776 >seq710657 Length=1012716 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || || ||| | ||||| ||||| | |||||||||| || | |||||||||| ||||| Sbjct 959757 ATCTTTTGGCTGAAGAAAAGGGGATTGATGCCTGGTCTAACATTCTCCAATGAGCTCATT 959816 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 || | || || |||||||| | |||||||||||| |||| Sbjct 959817 TCACGAGATGAGGGTCTTCACTGTGACTTTGCATGCTTGCT 959857 >seq675712 Length=283901 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || || ||| | ||||| ||||| | ||| |||||| || | |||||||||| ||||| Sbjct 201330 ATCTTTTGGCTGAAGAAAAGGGGATTGATGCATGGTCTAACGTTCTCCAATGAGCTCATT 201271 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 || | || |||||||| ||| | |||||||||||| |||| Sbjct 201270 TCATGAGATGAAGGTCTCCATTGTGACTTTGCATGCTTGCT 201230 >seq342775 Length=45875 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/126 (75%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 || || || ||| | ||||| |||||| | |||| ||||| || | || ||||| || Sbjct 1433 TCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCAGGTCTAACGTTGTCAAATGAACTC 1492 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTT 102085 ||||| || || ||||| |||||| | |||||||||||| |||||| | ||| ||| Sbjct 1493 ATTTCAAGAGATGAAGGCCTTCATTGTGACTTTGCATGCTTGCTGT---ACAAG---TTT 1546 Query 102086 GTTGAT 102091 |||||| Sbjct 1547 GTTGAT 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 973904268815075