Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq551685 136 4e-27 seq443419 118 1e-21 seq159776 111 1e-19 seq1017578 104 2e-17 seq22087 93.3 4e-14 seq1044444 91.5 1e-13 seq756854 91.5 1e-13 seq974195 87.8 2e-12 seq1152054 86.0 6e-12 seq342775 86.0 6e-12 seq1187639 82.4 7e-11 seq732367 82.4 7e-11 seq710657 82.4 7e-11 >seq551685 Length=11734 Score = 136 bits (150), Expect = 4e-27 Identities = 340/509 (67%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || || ||||||| || | |||||| ||||| ||||| || ||||||| |||| ||| Sbjct 7099 CCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTT 7158 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || ||||| || || | ||||| || ||||| || || | || |||| | ||||| Sbjct 7159 TTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAG 7218 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTC 14071 || | || || ||| |||||| | || | || | || |||||| || ||||||||| Sbjct 7219 GCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTC 7277 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT 14131 | || | || || || | ||| ||||| || || |||| | ||||| Sbjct 7278 GGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTT 7337 Query 14132 AG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14189 || | ||||| |||| ||||| || | ||| || |||||||||| || ||||| Sbjct 7338 AGGGTCCTTGA--TGTAGGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCA 7395 Query 14190 ATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAAT 14249 || || || ||||| || || | | || || | ||| ||||| | | | || Sbjct 7396 ATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAG 7455 Query 14250 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTT 14309 |||| |||| ||||||||||| ||||| ||| ||| || ||||| || | | | Sbjct 7456 TTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTG 7515 Query 14310 TTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAATC--GGATAAATCCTTAG 14364 ||| || || ||| | | ||| | | || ||||| || |||| |||||||| Sbjct 7516 GAAATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGAT--ATCCTTAG 7573 Query 14365 AAAGATCTACTTCATCAACTGTCCaaaaa 14393 | | ||| | ||| ||| | ||||| ||| Sbjct 7574 ACAAATCAATTTCTTCAGCGGTCCAGAAA 7602 >seq443419 Length=851766 Score = 118 bits (130), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||||||||||||||||||||||| |||||| || || ||||| ||||| Sbjct 697304 ACAAGCAAAATCACAATGAAGGCCCTCATCTCTTGAAATAAGCTCATTGGAAAAAGTTAA 697245 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 ||||||||||| || ||||| || ||||||||||| ||| |||| Sbjct 697244 ACCTGGCATCAAGCCCCGTTTCTTCAACCAAAATATGGCA-CAAA 697201 >seq159776 Length=731372 Score = 111 bits (122), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||||||||||| |||||||||||| ||||| ||| || ||||| ||||| Sbjct 718215 ACAAGCAAAATCACAATGAAAGCCCTCATCTCTTGAAATAATTTCATTGGAAAA-GTTAA 718157 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||||||||||| || ||||| || ||||||||||| ||| ||| || | ||||| Sbjct 718156 ACCTGGCATCAAACCCCGTTTCTTCAACCAAAATATGGCACAAAAGTTTCCAAAGAAGAA 718097 Query 13991 TATTCCCTCAA 14001 || | ||||| Sbjct 718096 AATACTCTCAA 718086 Score = 102 bits (112), Expect = 8e-17 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| | |||||||||||||| |||||||||||| |||||| || || ||||| ||||| Sbjct 722870 ACAAGTAAAATCACAATGAAAGCCCTCATCTCTTGAAATAAGCTCATTGGAAAA-GTTAA 722812 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||| ||||||| || ||||| || ||||||||||| ||| ||| || | ||||| Sbjct 722811 ACCTAGCATCAAACCCCGTTTCTTCAACCAAAATATGGCACAAAAGTTTCCAAAGAAGAA 722752 Query 13991 TATTCCCTCAA 14001 || | ||||| Sbjct 722751 AATACTCTCAA 722741 >seq1017578 Length=392639 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| | ||||||| ||||||||||||||||||| |||||| || || ||||| ||||| Sbjct 317551 ACAAGTAAAATCATAATGAAGGCCCTCATCTCTTGAAATAAGATCATTGGAAAAAGTTAA 317610 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||| ||||||| || |||| || ||||||||||| ||| ||| || | ||||| Sbjct 317611 ACCTTGCATCAAACCCTGTTTCTTCAACCAAAATATGGCACAAAAGCTTCCAAAGAAGAA 317670 Query 13991 TATTCCCTCAAC 14002 | |||||||| Sbjct 317671 ACTACCCTCAAC 317682 >seq22087 Length=1334425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/129 (77%), Gaps = 5/129 (4%) Strand=Plus/Minus Query 13847 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13906 |||| || |||| || |||| || ||||| ||||| || ||||| |||| ||| | Sbjct 881931 ATATCATACATGTATAGAAAT----CATGCAAAGTCACAGTGTAGGCCTTCATATCTTCA 881876 Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966 ||| || || || || ||||||| || ||||||||||| | ||| || ||||||||||| Sbjct 881875 AATGAGCTCATTGGAGAATGTTAGACCAGGCATCAATCCCCTTTTATTCAACCAAAATAT 881816 Query 13967 TGCAGCAAA 13975 |||| |||| Sbjct 881815 TGCA-CAAA 881808 >seq1044444 Length=78423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 76927 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 76986 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 | |||||||| | || | ||| |||| |||||| |||| |||||| Sbjct 76987 AGACCTGGCATTAGACCCCTTTTCTTTAGCCAAAAGATTG-AGCAAA 77032 >seq756854 Length=32667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| |||||| Sbjct 29271 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAATGTT 29212 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 | |||||||| | || | ||| || | |||||| |||| |||||| Sbjct 29211 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAA 29166 >seq974195 Length=173501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 169158 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 169099 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGA 13978 | |||||||| | || | ||| || | |||||| |||| |||||| || Sbjct 169098 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAAAGA 169050 >seq1152054 Length=76245 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 41869 AAGCAAGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGAGAACGTT 41810 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 | |||||||| | || | ||| || | |||||| |||| |||||| Sbjct 41809 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAA 41764 >seq342775 Length=45875 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 1533 AAGCATGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 1474 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 | |||||||| | || | ||| || | |||||| |||| |||||| Sbjct 1473 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAA 1428 >seq1187639 Length=4977 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || Sbjct 3444 ATCAAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAAC 3503 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||| ||| |||| | || | ||| || | |||||| |||| |||||| Sbjct 3504 GTTAGACCTAGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAA 3552 >seq732367 Length=5186 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 1577 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 1518 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 | |||||||| | || | ||| || | | |||| |||| |||||| Sbjct 1517 AGACCTGGCATTAGACCCCTTTTCTTCAGCGAAAAGATTG-AGCAAA 1472 >seq710657 Length=1012716 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| ||||| ||||| |||||||||| ||| || || || || |||||| Sbjct 959854 AAGCATGCAAAGTCACAGTGAAGACCCTCATCTCGTGAAATGAGCTCATTGGAGAATGTT 959795 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 | || ||||||||||| | ||| || | |||||| |||||| |||| Sbjct 959794 AGACCAGGCATCAATCCCCTTTTCTTCAGCCAAAAGATTGCA-CAAA 959749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472312214661000