Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq551685 147 2e-30 seq443419 118 1e-21 seq159776 111 1e-19 seq1017578 104 2e-17 seq22087 93.3 4e-14 seq1044444 86.0 6e-12 seq756854 86.0 6e-12 seq974195 84.2 2e-11 seq1152054 82.4 7e-11 seq342775 82.4 7e-11 >seq551685 Length=11734 Score = 147 bits (162), Expect = 2e-30 Identities = 340/507 (67%), Gaps = 9/507 (2%) Strand=Plus/Plus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 || || ||||||| || | |||||| ||||| ||||| || ||||||| |||| ||| Sbjct 7099 CCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTT 7158 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 || ||||| || || | || || || ||||| || || | || |||| | ||||| Sbjct 7159 TTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAG 7218 Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATATCCATTTTCTAGCCCATTC 13859 || | ||||| ||| |||||| | || | || |||| |||||| || ||||||||| Sbjct 7219 GCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTC 7277 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTT 13919 | || | || || || | || |||||||| || ||| | ||||| Sbjct 7278 GGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTT 7337 Query 13920 AG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCT 13977 || | ||||| |||| ||||| || | ||| || |||||||||| || ||||| Sbjct 7338 AGGGTCCTTGA--TGTAGGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCA 7395 Query 13978 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAAT 14037 || || || ||||| || |||| | || |||| ||| || || | | | || Sbjct 7396 ATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAG 7455 Query 14038 CTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTT 14097 |||| |||||||||||||||||||||| ||| ||| || ||||| || | | | Sbjct 7456 TTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTG 7515 Query 14098 TTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAA 14154 ||| || || ||| | | ||| | | || ||||| || | ||||||||| Sbjct 7516 GAAATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGATATCCTTAGAC 7575 Query 14155 AGATCTACTTCATCAACTGTCCAAAAA 14181 | ||| | ||| ||| | ||||| ||| Sbjct 7576 AAATCAATTTCTTCAGCGGTCCAGAAA 7602 >seq443419 Length=851766 Score = 118 bits (130), Expect = 1e-21 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||||||||||||||||||||||| |||||| || || ||||| ||||| Sbjct 697304 ACAAGCAAAATCACAATGAAGGCCCTCATCTCTTGAAATAAGCTCATTGGAAAAAGTTAA 697245 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||||||||| || ||||| || ||||||||||| ||| Sbjct 697244 ACCTGGCATCAAGCCCCGTTTCTTCAACCAAAATATGGCA 697205 >seq159776 Length=731372 Score = 111 bits (122), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| |||||||||||||||| |||||||||||| ||||| ||| || ||||| ||||| Sbjct 718215 ACAAGCAAAATCACAATGAAAGCCCTCATCTCTTGAAATAATTTCATTGGAAAA-GTTAA 718157 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 ||||||||||| || ||||| || ||||||||||| ||| || ||| | ||||| Sbjct 718156 ACCTGGCATCAAACCCCGTTTCTTCAACCAAAATATGGCACAAAAGTTTCCAAAGAAGAA 718097 Query 13779 TATTCCCTCAA 13789 || | ||||| Sbjct 718096 AATACTCTCAA 718086 Score = 102 bits (112), Expect = 8e-17 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| | |||||||||||||| |||||||||||| |||||| || || ||||| ||||| Sbjct 722870 ACAAGTAAAATCACAATGAAAGCCCTCATCTCTTGAAATAAGCTCATTGGAAAA-GTTAA 722812 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 ||| ||||||| || ||||| || ||||||||||| ||| || ||| | ||||| Sbjct 722811 ACCTAGCATCAAACCCCGTTTCTTCAACCAAAATATGGCACAAAAGTTTCCAAAGAAGAA 722752 Query 13779 TATTCCCTCAA 13789 || | ||||| Sbjct 722751 AATACTCTCAA 722741 >seq1017578 Length=392639 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| | ||||||| ||||||||||||||||||| |||||| || || ||||| ||||| Sbjct 317551 ACAAGTAAAATCATAATGAAGGCCCTCATCTCTTGAAATAAGATCATTGGAAAAAGTTAA 317610 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 ||| ||||||| || |||| || ||||||||||| ||| || ||| | ||||| Sbjct 317611 ACCTTGCATCAAACCCTGTTTCTTCAACCAAAATATGGCACAAAAGCTTCCAAAGAAGAA 317670 Query 13779 TATTCCCTCAAC 13790 | |||||||| Sbjct 317671 ACTACCCTCAAC 317682 >seq22087 Length=1334425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 13635 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694 |||| || |||| || |||| || ||||| ||||| || ||||| |||| ||| | Sbjct 881931 ATATCATACATGTATAGAAAT----CATGCAAAGTCACAGTGTAGGCCTTCATATCTTCA 881876 Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 ||| || || || || ||||||| || ||||||||||| | ||| || ||||||||||| Sbjct 881875 AATGAGCTCATTGGAGAATGTTAGACCAGGCATCAATCCCCTTTTATTCAACCAAAATAT 881816 Query 13755 TGCA 13758 |||| Sbjct 881815 TGCA 881812 >seq1044444 Length=78423 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 76927 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 76986 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 | |||||||| | || | ||| |||| |||||| |||| Sbjct 76987 AGACCTGGCATTAGACCCCTTTTCTTTAGCCAAAAGATTG 77026 >seq756854 Length=32667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| |||||| Sbjct 29271 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAATGTT 29212 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 | |||||||| | || | ||| || | |||||| |||| Sbjct 29211 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG 29172 >seq974195 Length=173501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 169158 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 169099 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 13767 | |||||||| | || | ||| || | |||||| |||| ||| || ||| Sbjct 169098 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAAAGAT 169049 >seq1152054 Length=76245 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 41869 AAGCAAGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGAGAACGTT 41810 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 | |||||||| | || | ||| || | |||||| |||| Sbjct 41809 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG 41770 >seq342775 Length=45875 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| |||||||||||||| |||||||| ||| ||||| ||||| || ||| Sbjct 1533 AAGCATGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 1474 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 | |||||||| | || | ||| || | |||||| |||| Sbjct 1473 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG 1434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471190624770600