Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1192815 100 2e-16 seq304998 98.7 7e-16 seq458253 95.1 9e-15 seq434543 84.2 2e-11 seq277093 82.4 6e-11 >seq1192815 Length=22216 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 10110 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 10051 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 10050 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 9991 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 9990 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 9931 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 9930 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 9881 >seq304998 Length=937332 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | || ||||||| || |||||| | || || Sbjct 915666 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 915607 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || ||||| || ||||||||||| | ||| || || | ||| | || || || || Sbjct 915606 CAGCTGTTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 915547 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| |||| || | ||| |||||| ||| ||| || || | || || |||| Sbjct 915546 GATCTTAGCTTTAACATTATCAATTGTGTCTG-AGCTCTCCACCTCCAATGTAATGGTTT 915488 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || ||||| ||||||||||| |||||||| Sbjct 915487 TGCCAGTTAGCGTTTTCACAAATATTTGCAT 915457 >seq458253 Length=694718 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | || ||||||| || |||||| | || || Sbjct 474353 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 474412 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || || || ||||||||||| | ||| || || | ||| | || || || || Sbjct 474413 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 474472 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| |||| || | ||| |||||| | ||| || || | || || ||||| Sbjct 474473 GATCTTAGCTTTAACATTATCAATTGTGTCCAAACTCTCCACCTCCAATGTAATGGTTTT 474532 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| ||||||||||| |||||||| Sbjct 474533 GCCAGTTAGGGTTTTCACAAATATTTGCAT 474562 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | || ||||||| || |||||| | || || Sbjct 549981 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 550040 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || || || ||||||||||| | ||| || || | ||| | || || || || Sbjct 550041 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 550100 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| |||| || | ||| |||||| | ||| || || | || || ||||| Sbjct 550101 GATCTTAGCTTTAACATTATCAATTGTGTCTGAACTCTCCACCTCCAATGTAATGGTTTT 550160 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| ||||||||||| |||||||| Sbjct 550161 GCCAGTTAGGGTTTTCACAAATATTTGCAT 550190 >seq434543 Length=395133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| || | ||| || | | |||| |||| || || || |||||| Sbjct 384211 TCCTTCTGAATGTTGTAGTCAGCCAAGGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAA 384270 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | | ||||||||| | || | ||||| || || |||| | ||||| || Sbjct 384271 ATTAGCCTCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 384330 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| ||| |||||| || | || |||||||| || || || |||||||| Sbjct 384331 TCAATGGTGTCAG-AGCTCTCGACCTCCAGTGTAATAGTTTTACCAGTCAGGGTTTTCAC 384389 Query 43098 AAAAATTTGCATT 43110 ||| || |||||| Sbjct 384390 AAAGATCTGCATT 384402 >seq277093 Length=401374 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| ||| || || | || |||| || || ||||| || Sbjct 296521 TCCTTCTGAATATTGTAATCGGCCAAAGTCCGACCATCCTCCAGCTGCTTACCGGCGAAG 296580 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || ||| ||||| | || | ||||| || || |||| | ||||| | Sbjct 296581 ATGAGTCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTA 296640 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||| ||| || || | || || || || ||||| || |||||||| Sbjct 296641 TCAATGGTGTC-CGAGCTCTCAACTTCCAAGGTGATCGTCTTGCCGGTGAGGGTTTTCAC 296699 Query 43098 AAAAATTTGCAT 43109 |||||| ||||| Sbjct 296700 AAAAATCTGCAT 296711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375621652806570