Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq168631 93.3 3e-14
seq842679 91.5 1e-13
seq996803 89.7 4e-13
seq172461 89.7 4e-13
seq458253 87.8 1e-12
seq783999 86.0 5e-12
seq277093 84.2 2e-11
seq265356 84.2 2e-11
seq1192815 82.4 6e-11
seq818882 82.4 6e-11
seq753218 82.4 6e-11
>seq168631
Length=335452
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||||||| | | ||| | |||||| || || ||||| ||||| |||||||| ||
Sbjct 177238 CCACCTCGCAAACAAAGCACAAGGTGCAAAGTCGATTCCTTCTGAATGTTGTAATCAACC 177179
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | ||||||||||||| ||||| | | || || |||||||| |||| |||
Sbjct 177178 AAGGTCTGACCGTCCTCCAGCTGCTTACCAACGAAGATGAGCCTCTGCTGGTCCAGGGGA 177119
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993
| || || ||||| || || || || || | | ||||| | || |||
Sbjct 177118 ATGCATTCCTTGTCTTGGATCTTGGCCTTAACATGATCAATGGTATC-CGAGCTCTCAAC 177060
Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | ||| || || || || || | ||||||||||| ||||||||
Sbjct 177059 TTCTAAGGTGATCGTCTTCCCGGTAAGGGTTTTGACAAAGATTTGCAT 177012
>seq842679
Length=263869
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||||| | | | ||| | ||| | || || ||||| |||||||||||||| |
Sbjct 132358 TTCCTCCTCTGAGACGGAGCACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAG 132417
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | |||| |||||||| || || ||| | || || ||||| ||||| ||
Sbjct 132418 CGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCGGCAAATATGAGCCTCTGTTGATCAGGGG 132477
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||||||||| ||| ||| || || | | | | ||||| ||||
Sbjct 132478 GAATTCCCTCTTTGTCCTGAATCTTCGACTTAACGTTGTCAATGGTATCTGAGCTCTCCA 132537
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047
|| | || ||||| || || || || || || ||||| || ||||| |||||
Sbjct 132538 CCTCAAGAGTGATGGTCTTTCCGGTCAACGTCTTCACAAATATCTGCATCTTAAA 132592
>seq996803
Length=140400
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||||||| | | ||| | |||||| || || ||||| ||||| |||||||| |||
Sbjct 17311 CCACCTCGCAAACGAAGCACAAGGTGCAAAGTCGATTCCTTCTGAATGTTGTAATCAGCC 17252
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||||||||| ||||| || | || || |||||||| ||| |||
Sbjct 17251 AAGGTCCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 17192
Query 18935 ACGCCCTCTTTGTC 18948
| ||| || |||||
Sbjct 17191 ATGCCTTCCTTGTC 17178
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/215 (71%), Gaps = 7/215 (3%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| || || ||||| ||||||||||| || || | ||| | |||| || |||||
Sbjct 16375 TGCAGGGTGGATTCCTTCTGAATATTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGCTGC 16316
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | ||||| | ||||||||| ||| | ||| || ||||| ||| ||
Sbjct 16315 TTTCCAGCAAAGATAAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGAATCTTG 16256
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCT 19015
|||||| | | | | ||| | ||| |||| || |||| || || || || ||
Sbjct 16255 GCTTTTACATTGTCAATAGT---GTCAGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCA 16199
Query 19016 GTTAAAGTTTTGACAAAAATTTGCAT-TTTAAATC 19049
|| | ||| |||||||| |||||||| || |||||
Sbjct 16198 GTAAGAGTCTTGACAAAGATTTGCATCTTGAAATC 16164
>seq172461
Length=351322
Score = 89.7 bits (98), Expect = 4e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| ||||| ||||| |||||||| |||| |||| | | ||||||||||| || ||
Sbjct 35560 GTAGATTCCTTCTGAATGTTGTAATCAGCCAGTGTTCGGCCATCCTCCAGCTGCTTGCCA 35619
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
||| ||||||| || ||||||| || | ||| |||||||| |||||||
Sbjct 35620 GCAAAAATAAGCCTTTGCTGATTAGGAGGAATGCCTTCTTTGTCTTGAATTTTC 35673
>seq458253
Length=694718
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| || |||||||| || ||||||||||| || | ||| | |||| ||||||||
Sbjct 550693 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCGTCTTCCAGCTGC 550752
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || || | ||| || || ||| | ||| || ||||| |||||
Sbjct 550753 TTCCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATTTTG 550812
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
||||| | | ||| |||||| | ||| ||| | ||||| || || || ||
Sbjct 550813 GCCTTTACATTGTCGATGGTATCGGAACTCTCGACTTCCAAAGTAATTGTCTTGCCAGTA 550872
Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041
| ||||||||||| || |||||
Sbjct 550873 AGTGTTTTGACAAAGATCTGCAT 550895
>seq783999
Length=659286
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| |||||||||||||| |||| || | || |||||||| |||||
Sbjct 659059 GTCGACTCCTTCTGAATATTGTAATCGGCCAGAGTACGACCATCTTCCAGCTGCTTACCG 659118
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || | ||||||||| || || | ||||| ||||| || || ||
Sbjct 659119 GCAAATATCAATCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTA 659178
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | || | || || | |||| ||| | ||||||||||||||||| | |||
Sbjct 659179 ACATTACCAATGGTGTCAGAACTCTCCACTTCAAGAGTAATGGTTTTACCTGTAAGGGTT 659238
Query 19025 TTGACAAAAATTTGCAT 19041
|| ||||| || |||||
Sbjct 659239 TTTACAAAGATCTGCAT 659255
>seq277093
Length=401374
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| ||| | | || | ||||| || || ||||| |||||||||||||| |||
Sbjct 296485 CCACCTCTCAAACGAAGAACAAGGTGCAGGGTTGATTCCTTCTGAATATTGTAATCGGCC 296544
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | ||||||||||| ||||| || | || ||||||||||||||| |||
Sbjct 296545 AAAGTCCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGTCTCTGCTGATCCGGGGGG 296604
Query 18935 ACGCCCTCTTTGTC 18948
| ||| || |||||
Sbjct 296605 ATGCCTTCCTTGTC 296618
>seq265356
Length=295507
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| ||| |||||||| ||||||||||| || || | ||| | | || || || ||
Sbjct 165448 TGCAGCGTTGACTCCTTCTGAATATTGTAGTCTGCAAGAGTTCTTCCATCTTCAAGTTGC 165389
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || | |||||||||||| ||| | ||||| ||||| ||| ||
Sbjct 165388 TTCCCTGCAAAGATCAACCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGAATCTTT 165329
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
|| || | ||| |||||| ||| ||||| || ||||| || || ||
Sbjct 165328 GCCTTCACATTATCGATAGTATCAGAGCTCTCAACTTCGAGCGTGATGGTCTTTCCAGTC 165269
Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042
| ||||| ||||| |||||||||
Sbjct 165268 AGGGTTTTCACAAAGATTTGCATT 165245
>seq1192815
Length=22216
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| ||| || || |||| ||| | ||||| |||||||| || ||||| || | |
Sbjct 10110 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 10051
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | || |||| || ||||| ||| | || | ||| || || || ||
Sbjct 10050 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 9991
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || || ||||| || || || || | | | | ||| || || || |
Sbjct 9990 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 9931
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
|| | |||||| || ||||| |||||||| ||||| ||||||||||| ||
Sbjct 9930 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 9881
>seq818882
Length=377336
Score = 82.4 bits (90), Expect = 6e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888
|||||||| ||||||||||| |||||| | ||| || || || |||| || | ||
Sbjct 62594 TAACACCAGGTGCAACGTAGTCTCCTTCTAAATGTTATAGTCAGCCAGAGTACATCCATC 62653
Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
|||||||| ||||| ||| |||| || |||||||| || || | ||||||||| ||
Sbjct 62654 TTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATC 62713
>seq753218
Length=1074133
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| || || ||||||||||| || ||||| |||| || | | ||||||| ||||
Sbjct 399369 TGCAGGGTCGATTCCTTTTGAATGTTATAATCGGCCAAGGTCCGGCCATCCTCCAACTGT 399428
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
||||| ||| |||| || |||||||| || ||| | |||||||| || || ||
Sbjct 399429 TTACCAGCAAAAATTAGCCTCTGCTGGTCTGGGGGAATACCCTCTTTATCCTGGATCTTT 399488
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|| || | ||| || || | || |||| ||| | || || || || || ||
Sbjct 399489 GCCTTCACATTATCGATGGTGTC-CGAGCTCTCCACTTCCAGAGTGATCGTCTTGCCAGT 399547
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
| |||||||||||||| |||||
Sbjct 399548 AAGGGTTTTGACAAAAATCTGCAT 399571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408324419001010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |