Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq168631 93.3 3e-14 seq842679 91.5 1e-13 seq996803 89.7 4e-13 seq172461 89.7 4e-13 seq458253 87.8 1e-12 seq783999 86.0 5e-12 seq277093 84.2 2e-11 seq265356 84.2 2e-11 seq1192815 82.4 6e-11 seq818882 82.4 6e-11 seq753218 82.4 6e-11 >seq168631 Length=335452 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||||||| | | ||| | |||||| || || ||||| ||||| |||||||| || Sbjct 177238 CCACCTCGCAAACAAAGCACAAGGTGCAAAGTCGATTCCTTCTGAATGTTGTAATCAACC 177179 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||||| ||||| | | || || |||||||| |||| ||| Sbjct 177178 AAGGTCTGACCGTCCTCCAGCTGCTTACCAACGAAGATGAGCCTCTGCTGGTCCAGGGGA 177119 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || || ||||| || || || || || | | ||||| | || ||| Sbjct 177118 ATGCATTCCTTGTCTTGGATCTTGGCCTTAACATGATCAATGGTATC-CGAGCTCTCAAC 177060 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| || || || || || | ||||||||||| |||||||| Sbjct 177059 TTCTAAGGTGATCGTCTTCCCGGTAAGGGTTTTGACAAAGATTTGCAT 177012 >seq842679 Length=263869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | | | ||| | ||| | || || ||||| |||||||||||||| | Sbjct 132358 TTCCTCCTCTGAGACGGAGCACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAG 132417 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | |||| |||||||| || || ||| | || || ||||| ||||| || Sbjct 132418 CGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCGGCAAATATGAGCCTCTGTTGATCAGGGG 132477 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| ||| ||| || || | | | | ||||| |||| Sbjct 132478 GAATTCCCTCTTTGTCCTGAATCTTCGACTTAACGTTGTCAATGGTATCTGAGCTCTCCA 132537 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || | || ||||| || || || || || || ||||| || ||||| ||||| Sbjct 132538 CCTCAAGAGTGATGGTCTTTCCGGTCAACGTCTTCACAAATATCTGCATCTTAAA 132592 >seq996803 Length=140400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||||||| | | ||| | |||||| || || ||||| ||||| |||||||| ||| Sbjct 17311 CCACCTCGCAAACGAAGCACAAGGTGCAAAGTCGATTCCTTCTGAATGTTGTAATCAGCC 17252 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| ||||| || | || || |||||||| ||| ||| Sbjct 17251 AAGGTCCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 17192 Query 18935 ACGCCCTCTTTGTC 18948 | ||| || ||||| Sbjct 17191 ATGCCTTCCTTGTC 17178 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || || ||||| ||||||||||| || || | ||| | |||| || ||||| Sbjct 16375 TGCAGGGTGGATTCCTTCTGAATATTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGCTGC 16316 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | ||||| | ||||||||| ||| | ||| || ||||| ||| || Sbjct 16315 TTTCCAGCAAAGATAAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGAATCTTG 16256 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCT 19015 |||||| | | | | ||| | ||| |||| || |||| || || || || || Sbjct 16255 GCTTTTACATTGTCAATAGT---GTCAGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCA 16199 Query 19016 GTTAAAGTTTTGACAAAAATTTGCAT-TTTAAATC 19049 || | ||| |||||||| |||||||| || ||||| Sbjct 16198 GTAAGAGTCTTGACAAAGATTTGCATCTTGAAATC 16164 >seq172461 Length=351322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||| |||||||| |||| |||| | | ||||||||||| || || Sbjct 35560 GTAGATTCCTTCTGAATGTTGTAATCAGCCAGTGTTCGGCCATCCTCCAGCTGCTTGCCA 35619 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||| ||||||| || ||||||| || | ||| |||||||| ||||||| Sbjct 35620 GCAAAAATAAGCCTTTGCTGATTAGGAGGAATGCCTTCTTTGTCTTGAATTTTC 35673 >seq458253 Length=694718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || |||||||| || ||||||||||| || | ||| | |||| |||||||| Sbjct 550693 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCGTCTTCCAGCTGC 550752 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || | ||| || || ||| | ||| || ||||| ||||| Sbjct 550753 TTCCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATTTTG 550812 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||||| | | ||| |||||| | ||| ||| | ||||| || || || || Sbjct 550813 GCCTTTACATTGTCGATGGTATCGGAACTCTCGACTTCCAAAGTAATTGTCTTGCCAGTA 550872 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||||||||||| || ||||| Sbjct 550873 AGTGTTTTGACAAAGATCTGCAT 550895 >seq783999 Length=659286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| |||||||||||||| |||| || | || |||||||| ||||| Sbjct 659059 GTCGACTCCTTCTGAATATTGTAATCGGCCAGAGTACGACCATCTTCCAGCTGCTTACCG 659118 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | ||||||||| || || | ||||| ||||| || || || Sbjct 659119 GCAAATATCAATCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTA 659178 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | || | || || | |||| ||| | ||||||||||||||||| | ||| Sbjct 659179 ACATTACCAATGGTGTCAGAACTCTCCACTTCAAGAGTAATGGTTTTACCTGTAAGGGTT 659238 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 659239 TTTACAAAGATCTGCAT 659255 >seq277093 Length=401374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | || | ||||| || || ||||| |||||||||||||| ||| Sbjct 296485 CCACCTCTCAAACGAAGAACAAGGTGCAGGGTTGATTCCTTCTGAATATTGTAATCGGCC 296544 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||| ||||| || | || ||||||||||||||| ||| Sbjct 296545 AAAGTCCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGTCTCTGCTGATCCGGGGGG 296604 Query 18935 ACGCCCTCTTTGTC 18948 | ||| || ||||| Sbjct 296605 ATGCCTTCCTTGTC 296618 >seq265356 Length=295507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||| |||||||| ||||||||||| || || | ||| | | || || || || Sbjct 165448 TGCAGCGTTGACTCCTTCTGAATATTGTAGTCTGCAAGAGTTCTTCCATCTTCAAGTTGC 165389 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | |||||||||||| ||| | ||||| ||||| ||| || Sbjct 165388 TTCCCTGCAAAGATCAACCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGAATCTTT 165329 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | ||| |||||| ||| ||||| || ||||| || || || Sbjct 165328 GCCTTCACATTATCGATAGTATCAGAGCTCTCAACTTCGAGCGTGATGGTCTTTCCAGTC 165269 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 | ||||| ||||| ||||||||| Sbjct 165268 AGGGTTTTCACAAAGATTTGCATT 165245 >seq1192815 Length=22216 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| ||| | ||||| |||||||| || ||||| || | | Sbjct 10110 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 10051 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| || ||||| ||| | || | ||| || || || || Sbjct 10050 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 9991 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| || || || || | | | | ||| || || || | Sbjct 9990 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 9931 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | |||||| || ||||| |||||||| ||||| ||||||||||| || Sbjct 9930 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 9881 >seq818882 Length=377336 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 |||||||| ||||||||||| |||||| | ||| || || || |||| || | || Sbjct 62594 TAACACCAGGTGCAACGTAGTCTCCTTCTAAATGTTATAGTCAGCCAGAGTACATCCATC 62653 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||||||| ||||| ||| |||| || |||||||| || || | ||||||||| || Sbjct 62654 TTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATC 62713 >seq753218 Length=1074133 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || || ||||||||||| || ||||| |||| || | | ||||||| |||| Sbjct 399369 TGCAGGGTCGATTCCTTTTGAATGTTATAATCGGCCAAGGTCCGGCCATCCTCCAACTGT 399428 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| |||| || |||||||| || ||| | |||||||| || || || Sbjct 399429 TTACCAGCAAAAATTAGCCTCTGCTGGTCTGGGGGAATACCCTCTTTATCCTGGATCTTT 399488 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | ||| || || | || |||| ||| | || || || || || || Sbjct 399489 GCCTTCACATTATCGATGGTGTC-CGAGCTCTCCACTTCCAGAGTGATCGTCTTGCCAGT 399547 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | |||||||||||||| ||||| Sbjct 399548 AAGGGTTTTGACAAAAATCTGCAT 399571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408324419001010