Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1192815 105 5e-18 seq456869 98.7 7e-16 seq304998 98.7 7e-16 seq458253 93.3 3e-14 seq878211 84.2 2e-11 seq255744 84.2 2e-11 seq307481 82.4 5e-11 >seq1192815 Length=22216 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| ||||| || || ||||| || || || ||| Sbjct 10111 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 10052 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 10051 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 9992 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || ||||| | ||| ||| || | | || || Sbjct 9991 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 9932 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||||||||||||||| || || |||||||| Sbjct 9931 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 9884 >seq456869 Length=1137902 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | |||| || || || || || || ||||||||||| | Sbjct 917721 CCGCCTCTCAAACGCAGATCCAAGTGAAGAGTTGATTCCTTCTGGATATTATAATCAGCT 917662 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| |||| ||| || || ||||| |||| | | ||||| || ||||| Sbjct 917661 AAAGTACGGCCATCCTCCAGTTGCTTGCCAGCAAAGATCACCTGCTGCTGATCAAGAGGT 917602 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 |||| || |||||| ||| ||| |||||| | ||| || || | ||| || Sbjct 917601 GCACCATCCTTATCTTGAATCTTTGCCTTGACCTTCTCAATGGTTTCCGTACTCTCAACC 917542 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | | ||| |||| ||||| |||||||| ||||| |||||||| Sbjct 917541 TCAAGAGAAATGATTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 917495 >seq304998 Length=937332 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| ||||| || ||| || ||||| ||||||||| | ||| |||| || Sbjct 915666 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 915607 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||||| || ||||| ||||||| |||||||| | || | || || || || Sbjct 915606 CAGCTGTTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 915547 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || ||| || || ||| || |||| |||||| || | ||||| ||||| Sbjct 915546 GATCTTAGCTTTAACATTATCAATTGTGTCTGAGCTCTCCACCTCCAATGTAATGGTTTT 915487 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || |||| || |||||||||||||||||| || Sbjct 915486 GCCAGTTAGCGTTTTCACAAATATTTGCATGCCG 915453 >seq458253 Length=694718 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| ||||| || ||| || ||||| ||||||||| | ||| |||| || Sbjct 549981 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 550040 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || || || || ||||| ||||||| |||||||| | || | || || || || Sbjct 550041 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 550100 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || ||| || || ||| || |||| |||||| || | ||||| ||||| Sbjct 550101 GATCTTAGCTTTAACATTATCAATTGTGTCTGAACTCTCCACCTCCAATGTAATGGTTTT 550160 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || |||| || |||||||||||||||||| || Sbjct 550161 GCCAGTTAGGGTTTTCACAAATATTTGCATGCCG 550194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| ||||| || ||| || ||||| ||||||||| | ||| |||| || Sbjct 474353 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 474412 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || || || || ||||| ||||||| |||||||| | || | || || || || Sbjct 474413 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 474472 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || ||| || || ||| || || |||||| || | ||||| ||||| Sbjct 474473 GATCTTAGCTTTAACATTATCAATTGTGTCCAAACTCTCCACCTCCAATGTAATGGTTTT 474532 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || |||| || |||||||||||||||||| || Sbjct 474533 GCCAGTTAGGGTTTTCACAAATATTTGCATGCCG 474566 >seq878211 Length=3116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || || | ||| ||||||||||| || || || Sbjct 1305 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 1246 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 1245 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 1186 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| | ||| ||| || | | || || Sbjct 1185 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 1126 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 || | || || || ||||| || |||||||| ||||| Sbjct 1125 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 1087 >seq255744 Length=371538 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | |||| ||||| || |||||| |||||||| ||||| Sbjct 138868 ACCACCTCTCAGACGAAGAACCAGGTGTAGGGTTGACTCTTTCTGAATATTGTAATCAGC 138809 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| ||||| ||||| || |||||||| || ||||||||||| |||| Sbjct 138808 CAGAGTTCTCCCATCTTCCAACTGTTTGCCAGCAAATATTAAACGTTGCTGGTCAGGAGG 138749 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || |||||| ||| || || || | ||| ||||||| | ||| || Sbjct 138748 AATACCCTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATTGTATCTGAAGACTCTAC 138689 Query 44074 ATCGACCGTAATTGTTTTACCGGT 44097 || | ||||| || ||||| || Sbjct 138688 CTCAAGGGTAATAGTCTTACCAGT 138665 >seq307481 Length=1856025 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || | ||| || ||| ||| || ||||| || |||||| | ||| |||| Sbjct 1819351 AAGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGAGTTCGCCCATCC 1819410 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || |||||||| | || || || || |||| | ||||| || || Sbjct 1819411 TCCAGCTGCTTGCCAGCAAATATTAGCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCC 1819470 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||| || || | | ||| || | ||| || || | || || ||| Sbjct 1819471 TGAATCTTAGCTTTCACATTATCTATAGTGTCAGAACTCTCAACTTCTAATGTTATCGTT 1819530 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || |||||||||||||||||||||||| Sbjct 1819531 TTACCCGTCAAAGTCTTCACAAATATTTGCATG 1819563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349430443566420