Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1192815 118 9e-22 seq842679 111 1e-19 seq878211 84.2 2e-11 seq679059 82.4 6e-11 >seq1192815 Length=22216 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || ||||| ||||| ||||| |||||||| ||||| |||||||| ||| | Sbjct 10110 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 10051 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| || |||||||||||| || || ||| | || | || ||||| || || Sbjct 10050 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 9991 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| || || || || | | ||| || || || ||| | Sbjct 9990 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 9931 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| |||||| || || ||||| || || ||||| ||||||||||| || Sbjct 9930 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 9881 >seq842679 Length=263869 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || || | ||| || | || || |||||||| || || ||||||||||| | Sbjct 131220 CCACCACGCAAACGCAAGACAAGGTGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGCA 131279 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| || | || ||||| ||| ||||||||||||||||||| || Sbjct 131280 AGTGTTCGACCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGTTGATCAGGTGGA 131339 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | |||||||||||| |||||| ||||| | ||| | ||| || | || Sbjct 131340 ATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTATCAATCGTATC-AGAGCTCTCAAC 131398 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || ||||| |||||||||| |||||||||||| |||||||| Sbjct 131399 TTCAAGCGTGATGGTCTTGCCGGTCAGCGTTTTGACAAAGATTTGCAT 131446 >seq878211 Length=3116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || ||||| || || || | || ||||||||||| |||||||| || | Sbjct 1304 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 1245 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||| || || ||| | || | || ||||| || || Sbjct 1244 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 1185 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||| ||| || || | | ||| || || || ||| | Sbjct 1184 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 1125 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAA 20200 |||| || ||||| || || ||||| || ||||||||| Sbjct 1124 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 1086 >seq679059 Length=136279 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| || || |||||||||||| | | ||| ||| || | |||| Sbjct 54699 TGAAGTGTCGATTCCTTCTGAATGTTGTAATCGGCAAGAGTGCGTCCATCCTCGAGTTGT 54640 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || | |||||| |||||| || | || |||||||| |||||| Sbjct 54639 TTTCCGGCAAAGATCAACCTCTGCTGATCGGTTGGAATCCCCTCTTTGTCTTGAATTTTA 54580 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | ||| | |||| || | || ||||| || ||||| ||||| || Sbjct 54579 GCTTTGACATTCTCAATTGTATCG-GAGCTCTCAACTTCCAGAGTGATGGTCTTGCCAGT 54521 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||||||||| || ||||| Sbjct 54520 AAGGGTTTTGACAAAGATCTGCAT 54497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| || || |||||||||||| | | ||| ||| || | |||| Sbjct 120255 TGAAGTGTCGATTCCTTCTGAATGTTGTAATCGGCAAGAGTGCGTCCATCCTCGAGTTGT 120196 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || | |||||| |||||| || | || |||||||| |||||| Sbjct 120195 TTTCCGGCAAAGATCAACCTCTGCTGATCGGTTGGAATCCCCTCTTTGTCTTGAATTTTA 120136 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | ||| | |||| || | || ||||| || ||||| ||||| || Sbjct 120135 GCTTTGACATTCTCAATTGTATCG-GAGCTCTCAACTTCCAGAGTGATGGTCTTGCCAGT 120077 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||||||||| || ||||| Sbjct 120076 AAGGGTTTTGACAAAGATCTGCAT 120053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413263242692865