Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq551685 174 1e-38 seq1178007 89.7 4e-13 >seq551685 Length=11734 Score = 174 bits (192), Expect = 1e-38 Identities = 561/857 (65%), Gaps = 39/857 (5%) Strand=Plus/Plus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| ||||| || || |||||| ||||| || ||||| || || Sbjct 6769 TTGGACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTA 6828 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTT 12960 || | || || || |||||||| |||||||| || |||| ||| | |||||||| || Sbjct 6829 CCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTT-CGACCTTGTAGTATTTCTT 6887 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || || | | |||| |||||| || || ||||| | ||| || |||||||| || Sbjct 6888 GTTACCGAAAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTC 6947 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt---ttttttCTAT 13077 | |||||| |||| || || || | || || || |||| ||| ||| || Sbjct 6948 AGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC---AAGAAGTATCTTTGTTCAAT 7004 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----A 13133 || || || ||| | || || | | | | ||| | || || |||| | | Sbjct 7005 TTCCACAGCCTCGGTGACAATTTTT-TCA--ACGATGGCTGGGTCTGG-TTTGTTCTTCA 7060 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCT 13193 ||| |||| || |||||||| || |||||| ||||| ||||||| || | | Sbjct 7061 AATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATT 7120 Query 13194 CGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAA 13253 |||| ||||| |||| ||| ||||| | |||| ||||| | ||| || || | |||| Sbjct 7121 CGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAA 7180 Query 13254 ACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG 13313 | ||||| || ||||| | ||||||| | ||||| || | | ||||||||| || Sbjct 7181 AGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACA 7240 Query 13314 TACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 | | ||| | |||| || ||||| | || || | || | ||| Sbjct 7241 -AGGCGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTC----ACCGATTTC 7295 Query 13373 ----ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGT 13428 || | | || || || || || | | |||| ||| ||| || || || Sbjct 7296 TGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGT 7355 Query 13429 ATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA 13488 ||| ||||| ||| || |||| || ||||||||||| ||| ||||||||||| || Sbjct 7356 ATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTA 7415 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 |||| | ||||||| | || ||||||| | | || |||| | |||||||| || Sbjct 7416 GAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATT 7475 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAG---TATGTGCTTAATAAAt---ttttt 13602 ||| || |||||| ||| || ||||| ||||| | || | | |||| | || Sbjct 7476 AACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTT 7535 Query 13603 ttCGTT--TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 ||||| ||||| || ||| || | | ||| || || ||||| | || ||| Sbjct 7536 CTCGTTCATTCTG-----TTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCA 7590 Query 13661 ACGGTCCAAAAAGAAGC 13677 ||||||| |||||||| Sbjct 7591 GCGGTCCAGAAAGAAGC 7607 >seq1178007 Length=137947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 13128 TTGATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTT 13186 ||||||| || | || | | || |||||||| ||||| || | ||||||||||| Sbjct 95794 TTGATAGCATACCTATAGAGCAAGCATGCAAAGTCACAATGGAGACCTTCATCTCTTGAA 95735 Query 13187 ATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATA 13246 || ||||| || |||||||||||||| ||||| || |||| ||| || | |||||| || Sbjct 95734 ATGAGCTCATTGGAAAATGTTAGACCAGGCATCAGTCCTCTTTTCTTCAGCCAAAAGATT 95675 Query 13247 GCAGCAAA 13254 ||| |||| Sbjct 95674 GCA-CAAA 95668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424486695894330