Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq551685 125 7e-24
seq159776 86.0 7e-12
>seq551685
Length=11734
Score = 125 bits (138), Expect = 7e-24
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526
|||| ||| |||||||| || ||||||||||| || |||| || ||||| || |||
Sbjct 7069 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 7128
Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586
|| |||||||||||||| | ||||||||||| ||||| || || || ||||| | ||
Sbjct 7129 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 7188
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC 21633
|| || || | || |||| || ||||| ||||||| || ||||||
Sbjct 7189 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACC 7235
>seq159776
Length=731372
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Minus
Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534
||| |||||||||||||| || || ||||| || || | |||||| ||||| |||||
Sbjct 718215 ACAAGCAAAATCACAATGAAAGCCCTCATCTCTTGAAATAATTTCATTGGAAAA-GTTAA 718157
Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG-CTCCTGAAAAGA 21593
||| ||||| || || | || || |||||||||| || | |||| | ||| | ||||
Sbjct 718156 ACCTGGCATCAAACCCCGTTTCTTCAACCAAAATA-TGGCACAAAAGTTTCCAAAGAAGA 718098
Query 21594 AAATGCCCTCAACGGCAGCAAATGCAAC 21621
|||| | ||||| ||||||| |||
Sbjct 718097 AAATACTCTCAATACATGCAAATGTAAC 718070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 523678511214600
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |