Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq878211 105 6e-18 seq661658 98.7 9e-16 seq434543 93.3 4e-14 seq679059 89.7 5e-13 seq168631 87.8 2e-12 seq172461 82.4 7e-11 >seq878211 Length=3116 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| || || || ||||| || | ||||| | ||| | ||||| ||||| || Sbjct 1087 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 1146 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 || | ||||| ||||||| ||||| ||||| || || || || ||||||||| | Sbjct 1147 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 1206 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | || || ||| | ||||| | ||||| | | ||||| |||||||||||| Sbjct 1207 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 1266 Query 26958 GAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||| | || | ||| ||||| | ||||| || Sbjct 1267 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 1304 >seq661658 Length=5917 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| |||||||| || || ||||| |||||| Sbjct 4040 GACACCATCGACAACGTTAAGGCGAAGATTCAGGACAAAGAGGGAATCCCTCCTGATCAA 3981 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | | ||||| || || ||||||| ||| | || ||| || || Sbjct 3980 CAGAGGCTCATATTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCGCCGATTACAAT 3921 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || ||||| ||| | || |||||||| | || ||||| |||| Sbjct 3920 ATTCAGAAGGAATCCACTCTTCACCTGGTCCTTCGTCTCAGAGGTGGAA 3872 >seq434543 Length=395133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 26754 TTTTAGTCAAA---CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACC 26810 ||||| | ||| ||| ||||| | ||||| ||||| | ||||| || | ||||| Sbjct 385103 TTTTATTAAAATATCAAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACAATCACT 385044 Query 26811 ATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAA 26870 |||| | || ||||||||||| | ||||| ||||| || || ||| Sbjct 385043 CTCGAGGTCGAGAGTTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAA 384984 Query 26871 GGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 26930 ||||| || || ||||| || | || |||| | || || || ||||| || | || Sbjct 384983 GGGATCCCACCTGATCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTCGAGGACGGCCGA 384924 Query 26931 AACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGA 26990 | | | |||||| ||||| ||||||||||||||| | |||||||| || | || || Sbjct 384923 ACCCTTGCCGACTACAACATCCAAAAAGAATCTACTCTGCATCTGGTTCTCCGTCTGAGG 384864 Query 26991 GGAGG 26995 ||||| Sbjct 384863 GGAGG 384859 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | ||||| | ||| | || Sbjct 384857 ATGCAGATATTTGTCAAAACCCTGACGGGAAAGACAATCACTTTGGAAGTCGAGAGTTCT 384798 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 384797 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 384738 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | || || || || || || || | | ||| | | |||||| ||| Sbjct 384737 CAAAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGAACCCTGGCCGACTACAAC 384678 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||||||| | || ||||| || | || || ||||| Sbjct 384677 ATCCAAAAAGAATCTACTCTGCACCTGGTTCTTCGTCTGAGGGGAGG 384631 >seq679059 Length=136279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| |||||| | || || ||||| |||||| Sbjct 119046 GACACCATCGACAACGTTAAGGCGAAGATTCAGGACAAACAGGGAATCCCTCCTGATCAA 119105 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || |||| | | ||||| || || ||||||| ||| | || ||| || || Sbjct 119106 CAGAGGTTCATATTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCGCCGATTACAAT 119165 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || ||||| ||| | || |||||||| | || ||||| |||| Sbjct 119166 ATTCAGAAGGAATCCACTCTTCACCTGGTCCTTCGTCTCAGAGGTGGAA 119214 >seq168631 Length=335452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | ||||| || || | ||| | || ||||||| | || | || Sbjct 176096 CAAGATGCAAATCTTTGTCAAGACTCTTACTAGCAAGACGATCACTCTGGAGGTTGAGAG 176155 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| || ||| | || ||| |||||| | ||||| ||||| || || || || Sbjct 176156 CTCTGACACTATTGAGAATGTAAAAGCCAAGATTCCAGACAAGGAAGGAATTCCCCCTGA 176215 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | || || | | || || || ||||||||||| |||| | |||||| Sbjct 176216 TCAACAGCGCCTGATATTTGCTGGAAAGCAGCTCGAAGATGACAGAACACTTTCCGACTA 176275 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | |||||||| ||||| || | ||||| ||||| | || ||||| || Sbjct 176276 CGATATTCAAAAGGAATCCACCCTGCATCTTGTCCTCCGTCTGAGAGGTGG 176326 >seq172461 Length=351322 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||||||||| ||||| ||||| ||||| || |||| || ||||| || || || Sbjct 276527 GACAAAGAAGGGATTCCTCCTGATCAGCAAAGGCTTATTTTTGGTGGCAAGCAGCTGGAG 276468 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | ||| | || || |||||||| || |||||||| |||| || ||| || Sbjct 276467 GATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCACCTTGTCTTG 276408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471263087038800