Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq511196 311 3e-80 seq605192 264 3e-66 seq861945 241 4e-59 seq801706 140 1e-28 seq1112346 125 2e-24 seq861151 123 7e-24 seq1056392 102 2e-17 >seq511196 Length=12334 Score = 311 bits (344), Expect = 3e-80 Identities = 687/1021 (67%), Gaps = 37/1021 (4%) Strand=Plus/Plus Query 41383 GCGATCTTGCGAGCGCACGTCAATGGACGGATGTGTCACAGTACGGTCTATCACGGCGCG 41442 || ||| | || ||||||||||| || || ||| ||||||| ||||||||| Sbjct 2200 GCCATCCTACGCGCGCACGTCAACCACCGCCTGCAGCACTCGACGGTCTGGCACGGCGCG 2259 Query 41443 CTATCGGGTCGGTCGACGGCGATGGGCTGCGGTGACGTGCAGCTGCTCAACGTTGCGCGC 41502 || ||||| || || || ||| ||| || | || |||| ||| ||||||||||| Sbjct 2260 CTGTCGGGGCGCTCCACCGCGCGCGGCGCTGGCGGCGCGCAGACGCTGAACGTTGCGCGG 2319 Query 41503 CCGCGTCCAGGCCGAAAAGTAAAA-GACA----CGATCACCTATCTCGACGCCGCGCGCC 41557 ||||| || ||| |||| || ||| | | || ||||| ||| | Sbjct 2320 CCGCGCCCCGGC----AAGTCGGCCGAGCTGTGCGAGGAGTTC-CTGGACGCGGCGAAGC 2374 Query 41558 GTCGCGACTACGATTATCTCTCGCGCCCGGAGGTCGGTCCACCGCTGGCGGCCCTCGCTG 41617 | |||||| ||| | || |||||||| | | ||| || |||| || || || | Sbjct 2375 GCCGCGACATCGAGTTCCTGTCGCGCCCCGGGCACGGCCCCATCTTGGCCGCTCTGGCCG 2434 Query 41618 ACGCGCAGCGGCATCTATTCTGTGCGACAAACCCCGGGTGCATTCTGGTCGTCGCCGACC 41677 | || ||||| | | ||||| || ||| || || || ||||||| || ||||| Sbjct 2435 ATGCACAGCGCCCGTTGTTCTGCGCCACACTGCCGGGCCACACGCTGGTCGGCGTCGACC 2494 Query 41678 TGTCCGGCATCGAGGCGCGCAAAGGCCCTTGGCTCGCGAACGATGAGGGCATGCTGGTCG 41737 || |||| |||||| |||||| | || ||||| || ||||| ||| |||||||| || Sbjct 2495 TGACCGGGATCGAGACGCGCATGGTGCCGTGGCTGGCCAACGACGAGCCCATGCTGGCCG 2554 Query 41738 AGTACGAACAAGGCATCGACGGTTACAAGGTCGAGGCCGCGACGATTTTTGACCTGCCCG 41797 || ||| ||| | || || |||||||||||||| | | || | || |||| Sbjct 2555 AGATCGAGTCGGGCGTGGATGGCTACAAGGTCGAGGCGTCCAACATCTACGAAAAGCCCT 2614 Query 41798 ACACCGACGCGGT-GACGAGCGATCAGCGGCAGATCGGCAAAATTACCCGCTTAGCGCTG 41856 || |||| | | ||| || |||||||| ||| | ||||| | ||| | |||||| Sbjct 2615 ACGCCGA---GATCGACAAG-GATCAGCGCCAGGTGGGCAAGGTGGTGCGCCTCGCGCTG 2670 Query 41857 CAATTTGGCGGTGGCGACGGCGCGCTAGACAATATGGCCA--AA-------GCCTACGGG 41907 || ||||| |||| ||||| | | |||||| || | ||||| Sbjct 2671 GGCTTCGGCGGCGGCGTGGGCGCCTTCACCTCGATGGCCGCGAACTATGGCGTCTACG-- 2728 Query 41908 CTGGAGCTCTCCGAAGATCTACGGCGAAAGATCGTCTGGTCGTACCGTGAGAGTCACCCG 41967 |||||| | ||||| | || ||||| ||| || ||| ||| || || Sbjct 2729 -TGGAGCCCGACGAAGCTGAGCGC------ATCGTGTGGAAGTTCCGCGAGGCGCATCCT 2781 Query 41968 GCCCTCTCGACGTGGTGGGCGAGCCTCGAATACGCGGCGCTGATTGCACTCGACCAACCC 42027 ||| || | |||||||| || ||||| |||| |||||| || || ||| ||| Sbjct 2782 GCCTTCGAGCGCTGGTGGGCCGTGCTGGAATATGCGGTGCTGATCGCGCTGGACACGCCC 2841 Query 42028 GGTCGCGCTGTTGTCGTCCCGATTGGCCGCGGATTGTGCACATCCGCGACGTTCGTTCGC 42087 || ||| | || | || || || |||||||| || || | | | ||||| ||| Sbjct 2842 GGCCGCCCGGTCGAGGTGCCCATCGGCCGCGGGTTCTGTTCGAAGGTCATCTTCGTGCGC 2901 Query 42088 GATACGACCGCAC--TGCGCATGGAGCTCCCGTCCGGTCGCGCGATCAGCTATCACAACG 42145 || ||||||| | ||||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 2902 GA--CGACCGCGCGCTGCGCATGGAGCTGCCCTCCGGCCGCGCCATCAGCTACCACAACG 2959 Query 42146 CGCGGCTGGTCCTAGAGCCTGGGGCTAGTGCGCCAATTGCGGTCTACGATAAGCCTAACG 42205 | || ||| ||| ||||| || ||||| | ||| ||| ||||||| ||||| | | Sbjct 2960 CACGCCTGCACCTGGAGCCGGGTGCTAGCGTGCCGCAGGCGATCTACGACAAGCCCGAGG 3019 Query 42206 GTGTGGTCGAGACGCTCGACCGCAAAATCTTGTCTAATAACATGACCCAGGGCCTCGCTC 42265 | |||||||||| |||||||| ||| | || || || ||| |||||||| || | Sbjct 3020 GCTACATCGAGACGCTGGACCGCAAGATCCTTTCGAACAATCAGACGCAGGGCCTGGCCC 3079 Query 42266 GCGATCTCTTCTGGGAGGCGATGCTTTCTGTCGCGCCGGTAGAGCAGATCGTTCACCACG 42325 |||| || |||||||| ||| | || | || || |||| |||||| ||||||| Sbjct 3080 GCGACCTGTTCTGGGAAATCATGGTCGACGTGGAGCGTGTCGAGCGGATCGTGCACCACG 3139 Query 42326 TATACGATGAGGTGATCTTGGAAGTGCCAGAGGAGCGAGCCGAGCTGCGACTCAAGCAGC 42385 | ||||| ||||| | |||| ||||| | ||||| || | || ||| ||| | |||| Sbjct 3140 TGTACGACGAGGTCGTGCTGGAGGTGCCGGTCGAGCGCGCTGCGCAGCGGCTCGACCAGC 3199 Query 42386 T 42386 | Sbjct 3200 T 3200 Score = 127 bits (140), Expect = 6e-25 Identities = 222/318 (70%), Gaps = 15/318 (5%) Strand=Plus/Plus Query 1474 GCGCCAGAAGCAGTCGACAGACCGACGCCATCGGCAAGCGTACCGGTTACGGCGGAAACG 1533 ||||| | |||| |||||| |||||||| | ||| || ||||| |||| || | Sbjct 7439 GCGCCGGCGGCAGCCGACAGGCCGACGCCGGTCGAAAGGGTGCCGGTCACGGGCGAGATC 7498 Query 1534 CTCGCGGTCGTACCGGTCGCAGTCGTGGACAGGACAAAGCGGCGACGCTGCGCATCGTAC 1593 |||||| || || || || || |||| || || || |||| ||| ||| ||||| Sbjct 7499 GTCGCGGCGGTGCCCGTGGCCGTGGTGGCCACGATGAATCGGCCGCGCACCGCGTCGTAG 7558 Query 1594 GTAATGGCAAAGTTAGGCGTCGTGAACCCGGACGTCATCAGCGACGCCGCGTTGGCAAAC 1653 || ||||| |||| || |||||||| |||| |||||||||||||| ||||| || || Sbjct 7559 GTGATGGCGAAGTCGGGGGTCGTGAAGCCGGCGGTCATCAGCGACGCGGCGTTCGCGAAG 7618 Query 1654 GAGGTTGCGCCCGACAGGTTGATCGCGGCAGAGGTGCGCTGCGTG-TCG--GTCGTGACA 1710 ||| || || |||||||||||| ||||| || |||| ||| || || || Sbjct 7619 CTGGTGGCCGTCGCGAGGTTGATCGCGCTGGAGGT---CTTCGTGCTCGACGTGGTCACG 7675 Query 1711 ATCAACGTAC---CCGACAGCGTCTGGAGCTGCGCCAGGCTCA---GTGTCAGCGGAGCG 1764 || | ||| | | | ||| | ||| |||||||| ||| ||| || ||| | ||| Sbjct 7676 ATGAGCGTGCCGGCAGGCAGGGCCTGCAGCTGCGCGAGGGTCATGCCGGTGAGCTGCGCG 7735 Query 1765 CCAAACAC---GGCAGCG 1779 || |||| ||||||| Sbjct 7736 CCGTACACGCTGGCAGCG 7753 Score = 122 bits (134), Expect = 3e-23 Identities = 263/390 (67%), Gaps = 10/390 (3%) Strand=Plus/Plus Query 38931 TGGTTCGGCGTCAACGTCGCCCACGCGCGTATGATC-----CGCGACTGTCTCGAGCAAT 38985 ||||||| ||| ||| ||| ||||||| |||||| |||| ||| | |||| Sbjct 1 TGGTTCGCCGTGAACATCGAGCACGCGCACATGATCGAGAACGCG-CTG-CGCGAGG--- 55 Query 38986 CCGGCGAGTCGGTAACGCTGATCTATGGCGATCTAGAGAAGGCCGAGCGCCTTGAAGGGG 39045 ||||||||||||| | ||| | ||||| || |||||| |||||||| | || | Sbjct 56 CCGGCGAGTCGGTCGTGACCATCCACGGCGAGCTCGAGAAGTCCGAGCGCGTCACCGGTG 115 Query 39046 TGCGCGAATTCCTGGCCAAGGAAACGCGTCACATCGTATCCGTAGCGACACTGACGACCG 39105 || ||| | |||| ||| || ||| |||| || || || | || ||||||| Sbjct 116 TGGCCGAGTACCTGAAGAAGCTGCACCGGCACGTCGTCTCGGTGGCCATGCTCACGACCG 175 Query 39106 GGTTTAACGCGCCGCACGTCGACGCCCTGGTGATCGTACGCGCAACGCGGTCGCACGTGC 39165 |||| ||||| | ||| ||| | | ||| | | ||| | ||||| || | |||| Sbjct 176 GGTTCAACGCAAAGTTCGTGGACTGCATCGTGGGCCTGCGCCCCACGCGCTCCCTGGTGC 235 Query 39166 TATTTCGTCAGATCGTCGGGCGTGGGTTTCGGCCGTATTCGGGCAAGGAAGACTGCCTCG 39225 | | || ||||||||||||||||| | || || || | |||||||| || || | Sbjct 236 TGTGGCGCCAGATCGTCGGGCGTGGCCTGCGCCCCTACCCCGGCAAGGACAACGTGCTGG 295 Query 39226 TACTCGATGCGGGCGGCAATTTTGCACGCCTGGGCGCGATCAATGCCGACCTAGAGCAAG 39285 | || || || |||||||| || || || | ||||| | ||||| || | | | Sbjct 296 TGCTGGACGCCGGCGGCAACTTCGCGCGGCACGGCGCCGTGAATGCGGAGATTGGTTCGG 355 Query 39286 CCGATAGTCGCGCGGGACTTTGGGAATGCA 39315 ||| ||||| || || |||||||||| Sbjct 356 GCGACTCACGCGCCGGCCTGTGGGAATGCA 385 Score = 91.5 bits (100), Expect = 4e-14 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 3287 CGGCGTAGGTCTGCTGCATAAACGGTCGTGGGTGATTTTGCCCGTGGCCGTATTCGAGCG 3346 ||||| ||||||||||| || || || || ||||| ||||| | ||| || ||||||| Sbjct 9802 CGGCGACAGTCTGCTGCATGAATGGCCGCGGATGATTCTGCCCTTCGCCATACTCGAGCG 9861 Query 3347 CCTGCGCGATGACCGCTACCGGCATACCGCCGCGCGCGTC 3386 | |||||||||| || |||||||| ||| |||||| ||| Sbjct 9862 CGCGCGCGATGACGGCCACCGGCATGCCGGCGCGCGGGTC 9901 Score = 86.0 bits (94), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 854 TGTAACCGTCGGCGTTGTACGGCAGCGAACGGTACGCCAACAGGGTCTCGAACAGCGCCT 913 |||| ||||| ||||||||| | ||| ||| |||| ||| | |||||| | || Sbjct 6819 TGTAGCCGTCCTGGTTGTACGGGATCGAGTTGTAGGCCAGCAGTGCCTCGAAGAATGCGC 6878 Query 914 GTTGCAGGTTACGACGCAACGCGATCCAGCCGAGCGCGGTGTCGGCCCACAGGAAC-TGC 972 | || || | || || |||| |||| |||||| ||||||||||| || Sbjct 6879 GCTGGAGCTCGCGGTTCAGGTAGATCTGATCGAGGTACGTGTCGACCCACAGGAACGCGC 6938 Query 973 CCGCCGATTGCGCCATTATACGTGACGGTGTAGGTGTTAGTGGCCGACGCGTACTTGCCC 1032 ||| | | || || || || | || ||||||||||| | ||| |||||| |||| Sbjct 6939 CCG-AGGTGGCACCGTTGTAGGCCACCGTGTAGGTGTTCGCGGCGTTCGCGTAGGCGCCC 6997 Query 1033 AGGTAGGTGTAGCCGTTGGACAGGAGCGCGTTAGCGTTGGCCAGGT 1078 |||||||||||| || || | |||||||| || ||||||||| Sbjct 6998 AGGTAGGTGTAGTGATTCGAGATCAGCGCGTTGGCCGTGGCCAGGT 7043 >seq605192 Length=1006 Score = 264 bits (292), Expect = 3e-66 Identities = 354/491 (72%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 20920 GTGCCGGCGGGCTGCGGAAACAGTCCTGACTCGATAATCGACCTCTCCACTGACGACGGG 20979 ||||| || ||||||||||||| || || || || || | | ||| |||| |||||| Sbjct 685 GTGCCCGCTGGCTGCGGAAACAACCCCGATTCTATGATGGCCTGCTCGACTGCCGACGGC 626 Query 20980 TAAAACTCGTAGTGGTAGCCGATGTGCATCGGGTTGTTAGGATCGTAACCAATATAGCAT 21039 |||||||| ||||||||||||||| |||||||||||| ||||| || | |||| | Sbjct 625 GAAAACTCGAAGTGGTAGCCGATGTTCATCGGGTTGTTGATGTCGTAGCCGACGTAGCTT 566 Query 21040 TTACCGCGCGATCCGAACATAGCGCGCATCAGCGCGTTGATCGAGGGTACGTCGCAACTG 21099 || ||||| |||||||| |||||||| |||||||||| |||| |||||| Sbjct 565 TTCCCGCGATCGCCGAACATCGCGCGCATGAGCGCGTTGAGCGAGCCGCAGTCGCAGGAC 506 Query 21100 GCGATATTGGCCGCAGCCTTAACCAACAGCAGCTGACGATACG---CATCGTCAGTCATC 21156 ||||| |||||||| ||||| || | |||||||| ||||| | ||||||| || Sbjct 505 GCGATGTTGGCCGCCGCCTTCACGAGCAGCAGCTTGCGATAGGAAACATCGTC---CAGG 449 Query 21157 CTGTAGGAGACATTGCCGCTGCTTTGGCCGTTGTAAAATGGCGCTTGGCTCCAACCTTTC 21216 ||||||||| |||| | | |||||| | | || || |||||| | Sbjct 448 GCGTAGGAGACGGTGCCCCCGGCCTGGCCGCCGAAGAACGGTTTCGTGCTCCAGGGCCAC 389 Query 21217 CACTGCGTGCCAGGTTGGGCGCCGATGTTGAAACCGAAGTTGTTACCCGGCGATTGCTGG 21276 || | |||||| ||| |||||| ||| ||| |||||||| | ||| |||| | | Sbjct 388 CAGTTCGTGCCCGGTGTGGCGCCCTTGTCGAAGCCGAAGTTCTGACCGGGCGCGGCCGTG 329 Query 21277 ACGAGCAGGTAACGACTACGCCCTAGGATACGGCCCCAGATGTCCAGGCCGAAGCCCGTC 21336 || |||| || ||| ||||| ||||| || ||||| |||||||| |||||||| | Sbjct 328 ACCTGCAGATAGCGAGAGCGCCCGAGGATGCGACCCCAAATGTCCAGCCCGAAGCCGACC 269 Query 21337 GCGGTGCTGATATCCCACACGTTCGCCAAGAAATCGGCCGAGAACTTGCTCAGGTCGACC 21396 ||||| ||| ||||||||||| | ||| || || ||| || ||||||| ||| Sbjct 268 GCGGTCGAGATGTCCCACACGTTGTAGAGGAAGTCCGCTTTGAATTTCGTCAGGTCAACC 209 Query 21397 CACTGGTCGAA 21407 ||||||||||| Sbjct 208 CACTGGTCGAA 198 >seq861945 Length=7612 Score = 241 bits (266), Expect = 4e-59 Identities = 943/1440 (65%), Gaps = 81/1440 (6%) Strand=Plus/Plus Query 9957 GCGTAAGATGTCCTGCGTGATCA-TCGAGGAGATCGGATTGCGCATGCAGAGCTGGTATA 10015 ||| | |||||| |||||| | | ||| |||||| |||||| | ||||| | | Sbjct 1185 GCGCAGGATGTCGCTCGTGATGAGTTGAGC-GATCGGTGTGCGCAGGAGCAGCTGCTGCA 1243 Query 10016 GGGCCATCGCCATGCAGTCGACGGCGTCGTCGTTGCGCACGTCGGGCGCGGCTACAATCT 10075 |||| || | ||||||||| |||| |||||||| | ||||||| || |||| Sbjct 1244 GGGCGATGGTCATGCAGTCCACGGTGTCGTCGTGCTTCGCGTCGGGGAAGGACGTGATCT 1303 Query 10076 CGGCCA-CGACGGGCACAATGGACGGTACGTCGTCCGGGTGCGGCAGCATGACCTGCCCC 10134 | || | | |||| ||| || |||| | ||||| ||||||||||| |||||||| Sbjct 1304 CAGCGATCCACGG-CACGATCCACGGCGCCTCGTCGGGGTGCGGCAGGTACACCTGCCCG 1362 Query 10135 GACTGCCAGACACCGGCCACGGCATGCCAGCGCGACTCTTTCGATCCCAGCGCCGGCACG 10194 | ||| | | || |||||| || ||||| ||| ||||| || |||| ||||||| Sbjct 1363 TTCGCCCACGCCCAGGACACGGCGTGTGCGCGCGCCTCCTTCGAGCCGAGCGGCGGCACG 1422 Query 10195 CCTACGATTCCCTGTACGTGGCGGCTGAGCATCTCAATCAACGCAGGGCCGTTGGCCGCG 10254 || || | || | ||| || ||||| || || | ||| | ||||| ||||| Sbjct 1423 CCGACAAGGCCGGGATAGTGCTTGCGCAGCATGTCGATGAGCGCTGCACCGTTCGCCGCT 1482 Query 10255 TCTTCGATGTAGATACGCGT-GCACTGTGGATAGGCGGC--CTTGAGATCGACAATCGCC 10311 || |||||| |||| ||| || | | || | || | ||| || || | || ||| Sbjct 1483 TCCTCGATGAAGATCTTCGTCGCGC-GCGGGT--GCTTCTGCTTCAGGTCCGCGATGGCC 1539 Query 10312 TGCGCAGTTGCCGTGAACGCGAGCTTCTCCCGGCGCATCGCCAGCAGCCAGACGCGGTTG 10371 || || || ||| |||| || |||| ||| |||||| |||||||| | || ||| Sbjct 1540 TGGGCCGTGGCCATGAAGGCAAGCTGCTCGCGGCGCCCGGCCAGCAGATACACATTGTTT 1599 Query 10372 TCGGAGGTTTTAGCCCATACGCCGATGGCGCAGAAATCCGATGTCTCCTTGCCCTTGAAC 10431 |||| || || |||| |||||| ||| ||| || || | || | |||||||| Sbjct 1600 TCGGCCGTCTTGCCCCACACGCCGGCGGCCACGAAGTCGGAAGCGTCGCCGTCCTTGAAC 1659 Query 10432 GACGCATCGACGGTCATGATGACCTGGGC-AAACGC-GGTCG-GCAGCTCGCCCTGGCGG 10488 | || || |||| ||||| |||| | || ||| | || ||| ||| | ||||| Sbjct 1660 GTAGCGTCCACGGACATGACCTCCTGCACGAAGCGCAGAGCGCCCAGGTCGGCACGGCGG 1719 Query 10489 TAGTAACGCAC---GCCACCCTTACCGAAGATGGCGCCCATCTCCGACATCGGCGCCTGT 10545 ||||| ||||| | | | ||| |||||| ||||| | || | | ||||| ||| Sbjct 1720 TAGTAGCGCACGAAGTCGCGCTT---GAAGATCGCGCCTACGTCGGCGAGCGGCGACTGC 1776 Query 10546 TGGTACATCGCCGCCCACCACGCTTCGGACATCGACGCCTTGATCTCGCGCAGCT---TC 10602 |||||||| |||||||||| |||||| | ||||| |||||||||| || Sbjct 1777 TGGTACATGCTCGCCCACCACATCAGGGACATGTGCCGCTTGAGTTCGCGCAGCTTTGTC 1836 Query 10603 TCTTCGCTGTGGAGCTCCGGGACGAGCGCACCTTCCCGCAAGTCGGGGTCGTAGCCGATC 10662 || || ||| | | ||| || ||||| ||||| | | ||||||||||||||| Sbjct 1837 TCATC---GTGTAAATGCGGTACAAGCGCGCCTTCGGGTAGCGATGGGTCGTAGCCGATC 1893 Query 10663 TCGCCGGGGTAGTTGAGTGCCGGATAGCTCAGCCTGCGATAG-TTCGGCTTG-CCTTCGT 10720 ||| |||| ||| || | ||| || |||| | | || ||| | | ||||| | Sbjct 1894 TCGTCGGGCAGGTTCAGAGAGGGAAAGGACAGCACG-GTCAGCCGCGGGTCGTCCTTCAT 1952 Query 10721 GTACTTTCTTGATGCGCGCCATGATGTCATTGGCGGACCAGGGCGTCCCCATGTTGATC- 10779 | ||| | | | |||| | | ||| ||||| ||||| ||||| || ||| || | Sbjct 1953 GGTCTTGC-GCACGTGCGCGAGCAGGTCGTTGGCCGACCACGGCGTGCCTATGAAGACCG 2011 Query 10780 TGCCCG-CTGCGCTGTTGCAGGCGCGTCGTGAAGACCGTCGCGTACCAGTCCTGATGACC 10838 |||| | | |||| || || || |||||||| || | |||||||||| | || | Sbjct 2012 TGCCGGACCGCGC--CTGTAGTCGAGTCGTGAACACGGCATCGTACCAGTCACGGTGTGC 2069 Query 10839 GTCTTGA-ACAGTCTGGCTCAATGCGTCCTGCGCGT------CGGCGGTCAAATCGTCAT 10891 | |||| ||| || | | || ||||| |||| ||||| ||||| Sbjct 2070 CTGTTGAGTGAGTTCGGAT-AGCGCCTCCTGTGCGTTCTTCACGGCG------TCGTCGA 2122 Query 10892 TCAGGCCGACGTCGATACTGAACCCGGTCAGACTGCCG------CCAACGCCCTGC-GCC 10944 | | ||| || |||| || || ||||| |||| ||||||||| || ||| Sbjct 2123 TGATGCCCACTTCGACCGAAAAACCTGTCAGCGGGCCGCCGACACCAACGCCCCGCAGCC 2182 Query 10945 TTGATGAATC-CATAAGGATGGTCGAAATAATCGTAGGTGTT-TCGCCCGCCCTTGAAAG 11002 | || || ||| | ||| || || ||| ||| |||||||||| Sbjct 2183 --AACCGTTCTCACCAGGCACTTGCAAACCGTCCGCGGCGTTGTCG-ACGCCCTTGAAGC 2239 Query 11003 TCAGCATCGAGGCGTGCGGGAATATCTCCCGGTAGATTGGCTCGCACATGATGCTGCGTG 11062 | | ||| | ||||| |||||||||||||| |||||| ||||||| | | | Sbjct 2240 CGATGAGCGACAGCTCGGGGAAAATCTCCCGGTAGATCGGCTCGAGCATGATGTTTTGCG 2299 Query 11063 CGTCGCGTAGGTTTGCTTT-------CGCGCGCG-GTAGC--GCGTACGACGACAGCGCG 11112 |||| || || |||| || ||| ||| ||||| ||| || ||| | ||| Sbjct 2300 CGTCCCGGCGG-TTGCGTTGGGCCAGTGCGTGCGCGTAGCTGGCGCTCG-CGATA-CGCA 2356 Query 11113 ACG-CGACAGTGACCAAGCACCGGACCTAGCCGCCCGATCACGTACCCAGGCAGACAGCG 11171 || || ||| | || || || ||| || |||| || ||| || || ||||| Sbjct 2357 CCGCCGGCAG-----ATGC-CCTGA--TAGGCGGCCGAACAGATACGGCGGTAGGCAGCG 2408 Query 11172 GGAGATCAGCGACGATTTCCCGAATTGAGGTGGCGCGGTCAGGTCGAGTATCGGTCGGCG 11231 | ||||| || ||| ||| ||||||| || |||||| | | | ||| || Sbjct 2409 CGCGATCAATGAACTTTTTCCGTGTTGAGGTCCTGCAGTCAGGACCAACACCGGGCGTTT 2468 Query 11232 GCCTGCAATCAGGTCTTCGACGAAGTCGTCGACCGCCTTGCAGACGGAGTAGGAAAAATC 11291 ||| || | || ||| |||||||| | ||||| ||| || || | ||||| | Sbjct 2469 GCCGGCCAACACGTCCTCGACGAACTGGTCGATCGCACGACACACACGCAACGAAAAGCC 2528 Query 11292 CGAGTGGATGAAGCGCGGTCGGTGCGTGGCAGACACGAATGCGGCGTAATTGGTCCGCGC 11351 |||||| |||| ||||| |||||| ||| ||||| |||||| | ||||| || || Sbjct 2529 CGAGTGCTTGAACCGCGGACGGTGCACGGCGCTGACGAAGGCGGCGAAGTTGGTTCGGGC 2588 Score = 226 bits (250), Expect = 8e-55 Identities = 594/888 (67%), Gaps = 45/888 (5%) Strand=Plus/Plus Query 8812 AGCAGCTTGACCAGCGGAATGTGCGAGACTGCCGCCATCTGCTCTTGCGACTGCGCCTGG 8871 |||||||| |||||||| |||||||||| || |||||||||| |||||||| ||||| Sbjct 3 AGCAGCTTCACCAGCGGCGTGTGCGAGACGGCGCCCATCTGCTCCTGCGACTGGGCCTGC 62 Query 8872 AGACTATCCAACCCAGACAACGGCGTATTGGTCTGCTGGATCTCCTCCGTGCCCTTGTCG 8931 || ||| | ||| |||| |||||| ||| |||| || || || || |||||||| Sbjct 63 AGGGCATCGAGCCCCGACAGCGGCGTGTTGATCTGGAAGAATTCTTCGGTCGCCTTGTCG 122 Query 8932 AGC-GCGCCGATGTTGCGATTGTCGCGGTACAAGTTAAACAGCTGCAAGCGCGCGTCGAG 8990 ||| || | | |||||||||||||||||||| ||| | ||||||| ||| |||||| Sbjct 123 AGCAGCAGC-AGGTTGCGATTGTCGCGGTACAGGTTCAGCAGCTGCGCGCGGTAGTCGAG 181 Query 8991 CGACTGTGCC-CCGCCCGGCGCGAGCAGCTGCGCCATATCGGTGGCGAGATTGGTCATCG 9049 || | ||||| |||| ||| ||| |||| || || | | || || | Sbjct 182 CGTC-GTGCCGGCGCCGGGCAGCAGCGACTGCTGCAGGTCCATCAGCACGCCGGACACGG 240 Query 9050 AGAACTGCTTGACCGTATCGCTGACGGACTGACGCGTGCGCAACCAGTTGTCGACGTACG 9109 |||| |||||||| || || |||||| || |||||||||| ||||||||| ||||| | Sbjct 241 AGAATTGCTTGACGGTGTCCGAGACGGATTGGCGCGTGCGCAGCCAGTTGTCCACGTAGG 300 Query 9110 GCATGGCGAGTTGCGAGATCGACACGCCCCGGAAACTATAGGCCGCCTTGAGCATGTCGC 9169 | || || || |||| || | ||| ||||| |||||||| |||||||||||| Sbjct 301 GAATCGCAAGCTGCGTCATGCTGATGCCGCGGAACGAATAGGCCGGCTTGAGCATGTCCG 360 Query 9170 CGACCGGGCGTCCGACAACGGTGTGAATGCGCGAGCTGTGGATCTTCTTGCCCGATGTCG 9229 | || ||||| | || | ||| | |||| ||| | || || ||||| Sbjct 361 CCACGGGGCGGCTGATGAGCGTGAACAGACGCGTCGCGTGCACCTCGGTG-CCGAT---- 415 Query 9230 CGATCCAGCTG---TCGGGCTTATAAAACGACGGCAGCGTCGGATCTGTGGCGTTGTACG 9286 ||||| | | |||||| || || | | |||||| || | | |||||| Sbjct 416 -CATCCACCAGGACGAGGGCTTGTAGAAGTTCTCCTTCGTCGGGTCGATCGAGTTGTAGT 474 Query 9287 CATTGGGCGACAGCCACATCGGCTCGATGGT-CGCAAACCCAATCAAGCAGCC---GCGC 9342 | || |||| | ||| || |||| | | |||| ||| ||| ||| |||| Sbjct 475 CGTTCGGCGTGACCCAGTAGGGTTCGACGATGCGCAGGCCC-TGGAAGGCGCCTTTGCGC 533 Query 9343 TGAACGAAACTCGGCGAGAGCAGCAACGGCGCATCGGCGGGAACCGAATCGCCGTCC--- 9399 || || ||| |||||||| ||||| | || |||| | ||| | ||| Sbjct 534 ---ACCGAATAGGGCTTGAGCAGCAGCGGCG---TGTCGCGAACGGTCTCGTCATCCTTG 587 Query 9400 ATCTTGAGGTGCGGAAAGACGTGCGCACCGCCATACGCCTGGTCGTGAATGACGACCGTG 9459 | ||||| || || | ||||| ||||| | ||||||||||| | ||| | | | Sbjct 588 AGCTTGATGTACG------CATGCGCGCCGCCGAATGCCTGGTCGTGCACGACCATCTGG 641 Query 9460 CGAACTAGCGTGCGCACATTGTACTGCTCTAGTT---TCTGGGTGATGCGTGTGGCTTTG 9516 || || || ||| | || ||| || | || | | |||||| || Sbjct 642 CGCACCGCCGCGCGGATGTTCAGGCGCTTCAGCTCGGCCTCGAT-CTGCGTGCAGC--GC 698 Query 9517 TCGGCGGCAAGCTCGTCTTTCGACGAACAGGTGATCTTACCCCAGGCGCGCACGCACTCG 9576 ||| || | || |||| ||||||| | | ||||||| ||||||||||||| Sbjct 699 TCGTCGTC--GC-CGTCGCCCGACGAA---GCCACGACACCCCAGCAGCGCACGCACTCG 752 Query 9577 TCGGCCGGCGTCTCGTGCATCGTCCGATATTCGGGCAGCTGCGCCAATAGCGCTAGGGTC 9636 ||||| ||||||||||||| | || || |||| |||||| ||| |||| || ||| Sbjct 753 TCGGCAAGCGTCTCGTGCATGGAGCGGTACTCGGCCAGCTGGCCCAGCAGCGAGAGTGTC 812 Query 9637 GGAAATCCTGGCCAGCTGGTCGCCTCGACGAACGACAAGGCATTGCGG 9684 || || || ||||||| || ||||| ||| |||| || |||||| Sbjct 813 GGGAAGCCGGGCCAGCCGGCGTTCTCGATGAAGGACAGCGCGTTGCGG 860 >seq801706 Length=6178 Score = 140 bits (154), Expect = 1e-28 Identities = 302/442 (68%), Gaps = 20/442 (5%) Strand=Plus/Plus Query 30400 CGCCGTGGCGCGCACGAACGAACATTTTCGCTT--TCGCCCCGCGCCCGCGCTGTTCGTC 30457 |||||||||||||||||||| || |||| | || ||| | ||| |||||| | Sbjct 4115 CGCCGTGGCGCGCACGAACGC-CACGTTCGACTGGTCACCCGGTGCCA-CGCTGTGCCCG 4172 Query 30458 ATCGATGTCGATATCGACTCCGAAACTGTGCCATATCGCACTGTCCAAGACGCGCTCGAC 30517 |||||||| || ||||| ||| | | || |||| | | | ||||||||| Sbjct 4173 ATCGATGTGGACGTCGACACCGG--CGGCTTCACGTCGC----TGGACGCCGCGCTCGAT 4226 Query 30518 GCGCTCGAAAACTGTTCGCCCTGGCTTAAGCAAGCGGTGCGCGTGGCGCGCCCATCGTCG 30577 ||||||||| || |||||||| ||| | |||| | ||||| || ||||| Sbjct 4227 GCGCTCGAAGCGTGCCACCCCTGGCTCGCGCACGTCACGCGCATCGCGCGGCCCTCGTCC 4286 Query 30578 TCGTCTTTTGTGGGCGACAGGGGTCTACGCGGGATCCACGTTTACTTGACGGTGACGTCG 30637 ||||| | ||||||||| | || || ||||| | || || ||||| |||| ||| Sbjct 4287 TCGTCGTACGTGGGCGACCGCGGGCTGCGCGGCGTGCATGTCTACTTCGCGGTTACGCGC 4346 Query 30638 GGCGAGGACATCCCTTTACTTGCCGAGCGGCTCAAAATGGATCAGTGGCTGGCGGGCCGC 30697 ||| ||||||||| || |||| ||| | | || | |||||||| || || Sbjct 4347 GGCACGGACATCCCCGCGCTGGCCGTGCGCATGCAGGCCGAGGAATGGCTGGCCGGGCGG 4406 Query 30698 GGGCGTATCGTGA---TTTCGAAGTCGGGGGCGCTGCTCGTGCGCCAACTGTCCGACGAC 30754 |||| |||||| | |||||||| || ||||||||||||||||| || ||||| | Sbjct 4407 GGGC---TCGTGAAGATCTCGAAGTCCGGCGCGCTGCTCGTGCGCCAGCTCTCCGA-TTC 4462 Query 30755 GC-CATGTACCAGCCTAGCCGTCTCATTTTCGAGGCCGCGCCCGTATTGGGCGAAGGCGT 30813 || | |||||||| || || || |||||||||| || || | |||||| ||| Sbjct 4463 GCTGGTCTACCAGCCCTCACGCCTGATGTTCGAGGCCGAACCGGTGTGCAGCGAAGACGT 4522 Query 30814 AACCCGTGCAGTACCCCCGACG 30835 ||| ||| | ||| |||| Sbjct 4523 --GCCGCGCAACATCCCGGACG 4542 >seq1112346 Length=1586 Score = 125 bits (138), Expect = 2e-24 Identities = 257/377 (68%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 38175 CGTTGGTACCAGCGCGACGCCGTCGACGCCGTTATCTCGGCACTGCAAACGGCGCACAAC 38234 || ||||| ||| ||| || ||||||||| | || || || | ||||| ||| Sbjct 1149 CGCTGGTATCAGGCCGAGGCGCGCGACGCCGTGCTGTCCGCGTTGATGGCTGCGCAGAAC 1208 Query 38235 ACACATCCTATCGCGGCCATCGTCACTGGTGGCGGCAAGTCGCTCGTCGCCGCAGCGCTC 38294 ||| | || | || ||||||||||| || |||||||| |||| | ||||| ||| Sbjct 1209 ACAAACCCGCTGGCTGCCATCGTCACGGGCGGCGGCAAAGCGCTGCTGGCCGCGATGCTG 1268 Query 38295 ACTGAGGCACTGATTGCA-CGGCAGCCGGAGGCGCGCGTGATGGTCCTAGCGCCGTCGCA 38353 | ||| | ||| | || | ||||||| |||||||| ||| ||| || |||||| Sbjct 1269 ATGGAGTCGCTG-TGCCAGCTCCAGCCGGGTGCGCGCGTCATGTGCCTGGCCCCGTCGAT 1327 Query 38354 GGAGCTGGTTGCCCAGAACACCGAAGAAGCACGCGAGTACCTCTCGGCTACGCTATCGGC 38413 |||||| || |||||| || ||||| || || || |||| |||| | || Sbjct 1328 GGAGCTCGTGAAGCAGAACGTTGAGGAAGCCATCGGCTATCTGCCGGCGGCGCTGGCCGC 1387 Query 38414 GGGAATCGGTGTCTACTGCTCGTCGCTAGGACGCAAGGATCGCCAG-CGCAAGATCACCT 38472 | | | || ||||||||| || ||| || ||||| || | | |||| | |||| Sbjct 1388 GCGCGTGGGCGTCTACTGCGCGGGGCTCGGCATGAAGGAGCGGCTGTCGCA-GCTCACGA 1446 Query 38473 TCGGCACGCCGCAATCCGTATGGCGGCAGGTCCGGCGGTTTGGCCAGATCGACTATTGCA 38532 | ||||||||||| || || |||||||| ||| || |||| | ||||| || Sbjct 1447 TTGGCACGCCGCAGTCGGTGGCCCGGCAGGTGAAGCGCTTCGGCCGGCAGGACTACGTCA 1506 Query 38533 TCGTCGATGAGGCCCAC 38549 || |||||||||| ||| Sbjct 1507 TCATCGATGAGGCGCAC 1523 >seq861151 Length=2441 Score = 123 bits (136), Expect = 7e-24 Identities = 174/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 22442 GGCGTATGTCGCCGGCTGGCGCGAGAGGAAGTAGATGCGTCCGAGCGCGTCCTGATACGC 22501 |||||| || ||| |||| |||| ||||||||||||||| || || ||||||||||||| Sbjct 105 GGCGTAGGTGGCCTGCTGACGCGTGAGGAAGTAGATGCGGCCCAGTGCGTCCTGATACGA 164 Query 22502 ACCGGTCGATGTCGCCGGGTCTACATTAGCGATCAGCTGCAAAAGAGCCGCATTGAGTTG 22561 || | || ||| || ||| | ||||| |||||| || ||| | || | Sbjct 165 GCCTGAGCTCGTGAGCGGATCGACACTGGCGATGAGCTGCGCGAGCATCGCCT-GAAACG 223 Query 22562 CGTCAAC-ATGTACGCTTGACT-CTGCGCGAGCTGCCCTTGCGGTGTCGTTAGCTCCGTG 22619 || | || ||||| || || ||| || |||||||| || || ||||| ||||| ||| Sbjct 224 CGGCCACCATGTAAGCCTGCGAGCTG-GCCAGCTGCCCCTGGGGCGTCGTCAGCTCGGTG 282 Query 22620 CTGAGCGCTTTTCCGGACGCGGCGAAGGCCGACACGTAGTCGGCCATCACGCCTTGCAG 22678 ||||| | || || | ||| |||||||| | ||||||||||||| ||||| || || Sbjct 283 CTGAGGGTCTTCCCCGTCGCAGCGAAGGCGGCGACGTAGTCGGCCAGGACGCCCTGAAG 341 >seq1056392 Length=5075 Score = 102 bits (112), Expect = 2e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 7604 GTCGCCGAAGTCGATGCCGACCTGCGTGTCGTAGATCCACTTCTCGCGGCCAGCGCGCAC 7663 |||||||||||||| |||| ||||||||||| ||||||||| |||||| || || ||| Sbjct 656 GTCGCCGAAGTCGACGCCGGCCTGCGTGTCGAAGATCCACTGCTCGCGCCCGGCCTTCAC 597 Query 7664 GTGCGTGTGACGCGGGGATTTGCCGGCCGAGCTATGTCGCCAGTACGCGTAGCGGATACC 7723 ||| || | ||||| ||||| || | || |||| ||| || | ||| Sbjct 596 GTGGTTGCGCCGCGGCTCCTTGCCCGCACTGGAGTGGATCCAGGTCGCCCAGGTCAGACC 537 Query 7724 TAACTCGTTTTGGCGCGCGCTGTTAAGATGCGCGTTAAGCTTGTTGGACTGGTCGCGTGC 7783 | ||| | || |||||| || | || || | |||||| ||||||||||| || Sbjct 536 CAGCTCCTGCTGCCGCGCGGCATTCATCTGTGCCGTGGCCTTGTTCGACTGGTCGCGCGC 477 Query 7784 GATGAGCGCGGCGCGG 7799 ||||||||||||||| Sbjct 476 AATGAGCGCGGCGCGG 461 Score = 89.7 bits (98), Expect = 2e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 5653 GTTACGCGCCGTTCTTACCGATCATGACAGTCTGACCCG-CGACCGCCGTTTCGCTCAGC 5711 |||| |||||| | || | ||| ||||| || || ||| || |||| || || Sbjct 4694 GTTAGGCGCCGGTGTTGCTGATGATGACGGT-TGCGCCGACGGTGGCCGCCTCCGACACG 4636 Query 5712 AGCACGAAGCCAGTGTCGACGGTCGT-GC-----CCGAAACTGCCGCGCCGATGTTGATC 5765 |||||| |||| ||||||||||| || || ||| | | |||||||||| || | Sbjct 4635 AGCACGTAGCCGGTGTCGACGGTGGTCGCGGGCGGCGAGCCCGGCGCGCCGATGATGGTG 4576 Query 5766 AGACCGGTGGCTGGATTCCAGATCACGGCCGCGCCGCGCGTCGGAGTACCGGTGACCGCA 5825 |||||| | | | ||||| |||||| ||||||||| |||||| ||||||| | | Sbjct 4575 TTGCCGGTGACGGCGTCCCAGAACACGGCAGCGCCGCGCACCGGAGTGCCGGTGATCACG 4516 Query 5826 TCGGCGACCGCGAAGAAGTCGGCAATCGCGAACAGTTCGACGGGCTGACCCTG 5878 |||| | | |||||||| | | |||||| | |||||||| ||||| Sbjct 4515 TCGGTGCGGACCCAGAAGTCGCCCTTGCCGAACATTGACACGGGCTGGCCCTG 4463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146945878651650