Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_008364.1 Length=26537 Score E Sequences producing significant alignments: (Bits) Value seq929198 145 1e-30 >seq929198 Length=1935 Score = 145 bits (160), Expect = 1e-30 Identities = 309/455 (68%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 22145 AATGAATATCACAGACGCGGGCTTACGCGGTTACGACCCTAAAGGCATTGTTATTCATAA 22204 ||||||||| | | || ||| |||| ||||| |||||| || | || |||||||| Sbjct 731 AATGAATATATTAAATGCTGGCGTACGTGGTTATAACCCTACTGGGGTAGTAATTCATAA 672 Query 22205 TGACGCCGGGAGCGACTACGCAACCCCAAACTTTTATAGAAACTGGCTTCCACCACGTAA 22264 |||||| || || || | | | ||| |||| | ||||| || | | || Sbjct 671 TGACGCAGGCTCAAACGGTGCTAATACTAGCTTCTATAATAGTTGGCTACCTACGCACAA 612 Query 22265 CAAAGAATTGGGTTTTGCTCATGTTTATATGTCAAACACTGATAGATTACAAGCAGCAGA 22324 | |||| | |||||||||||||| ||||| | || | | ||||| || | || Sbjct 611 CCCAGAACTTGGTTTTGCTCATGTCTATATCGCTTCTGATGGTCGTTTACAGGCTTCTGA 552 Query 22325 CTTCAATTTAAAAGCATGGCACGCCGGAAATAGCTACGCTAATGCTAACTACGCGTCGTG 22384 ||| | | | |||||||| | || |||| ||| | ||||| || || Sbjct 551 CTTTAGTAATATGGCATGGCATTGTGCTAACTCATACGGCAATACAAACTATGCAAGCTG 492 Query 22385 GGAGGTTTGCCAATCTAGCGGGA-ACTTAGCACAGTTCCTTAAAAATGAACAAGCGGTAT 22443 ||| || || || || || ||| | ||| ||||| | || || ||||| |||||| Sbjct 491 GGAAGTGTGTCAGTC-AGAGGGCGATTTAAACCAGTTTTTAAAGAACGAACAGGCGGTAC 433 Query 22444 TAGATGATGTAGCTAAATACATGAAACAATGGGGGCTAACCCCAAATCGTGACACAGTAA 22503 | ||||| |||||||| |||||||||||||||| ||| || |||| ||| || |||| Sbjct 432 TTGATGACGTAGCTAAGTACATGAAACAATGGGACTTAATTCCTAATCATGATACTGTAA 373 Query 22504 AATTACACCGTGAACTCTCTAGCACAAGTTGTCCGGCTAGA---TCTGTATCAGTTCATG 22560 | ||||| | || | |||||||||||||| | ||||| || ||| || |||| Sbjct 372 AGTTACATCAAGAGTTATCTAGCACAAGTTGCC---CTAGACGCTCCGTAGAGGTACATG 316 Query 22561 GTAACACTTTAG-AAGCTACTCGAACATACTTCAT 22594 || |||||||| ||||| ||| ||||||| || Sbjct 315 GTGGCACTTTAGAAAGCT-GTCGCTCATACTTTAT 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83587449967500