Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq842679 116 3e-21 seq1192815 104 2e-17 seq1122789 96.9 3e-15 seq679059 96.9 3e-15 seq485728 96.9 3e-15 seq265356 95.1 1e-14 seq913050 91.5 1e-13 seq172461 91.5 1e-13 seq1197656 89.7 4e-13 seq929835 84.2 2e-11 seq810261 84.2 2e-11 >seq842679 Length=263869 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||||||| |||||||||| ||||| || | ||| || | Sbjct 131446 ATGCAAATCTTTGTCAAAACGCTGACCGGCAAGACCATCACGCTTGAAGTTGAGAGCTCT 131387 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || |||||| |||||||||||| |||| |||||| Sbjct 131386 GATACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 131327 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||||| ||| ||||| || | || ||| | ||| | || ||||| || Sbjct 131326 CAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGAACACTTGCTGATTACAAC 131267 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || | || |||||| |||| ||||| Sbjct 131266 ATTCAGAAGGAATCTACCCTCCACCTTGTCTTGCGTTTGCGTGGTGG 131220 >seq1192815 Length=22216 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||||||||| ||||| || | ||||| || || |||||| ||||| ||| | Sbjct 9881 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 9940 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || ||| | | || || || || ||||| ||||| |||| || Sbjct 9941 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 10000 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||||| | || | ||| || || |||||||||||| || |||| || |||| || Sbjct 10001 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 10060 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| |||||||| ||||| || || ||| | || | ||||| Sbjct 10061 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 10110 >seq1122789 Length=489025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| |||||||||||| |||| ||||| ||||||||||||| || ||||| Sbjct 336431 AAAATTCAAGACAAAGAAGGCATTCCTCCTGATCAGCAAAGGCTTATTTTTGTTGGCAAG 336372 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 336371 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 336312 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||| ||| ||||| Sbjct 336311 CTTGTCTTGCGTCGGCGTGGTGG 336289 >seq679059 Length=136279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| |||||||||||| ||| ||||| ||||||||||||| ||| ||||| Sbjct 120648 AAAATTCAGGACAAAGAAGGCATTCTTCCTGATCAGCAAAGGCTTATTTTTGCTGGCAAG 120707 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 120708 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 120767 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || |||||| |||| ||||| Sbjct 120768 CTTGTCTTGCGTTTGCGTGGTGG 120790 >seq485728 Length=372489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| |||||||||||| |||| | |||| ||||||||||||| ||| ||||| Sbjct 86668 AAAATTCAGGACAAAGAAGGCATTCCTGCTCATCAGCAAAGGCTTATTTTTGCTGGCAAG 86609 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 86608 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 86549 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||| || ||||| Sbjct 86548 CTTGTCTTGCGTCGCCGTGGTGG 86526 >seq265356 Length=295507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || ||| |||| ||||| ||||| || |||| || | Sbjct 165474 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 165533 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 165534 GATACGATCGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAG 165593 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| |||||||| |||| ||| |||| | |||||||| || Sbjct 165594 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAC 165653 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || |||||||| ||| | || ||||||||||| ||||| Sbjct 165654 ATCCAGAAGGAGTCTACACTTCATCTCGTCTTGCGTCTGCGTGGTGG 165700 >seq913050 Length=592780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| | ||||||||||| |||| | |||||||||||| |||||| ||| ||||| Sbjct 269882 AAAATTCACTACAAAGAAGGCATTCCTCTTGATCAACAAAGGTTTATTTTTGCTGGCAAG 269941 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| ||| | || ||||| || || || || |||||||| | || Sbjct 269942 CAGCTGGAGGATGACCGAACACTTGCTGATTACAACATCCAGAAGGAATCTACCATCCAC 270001 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||| ||| ||||| Sbjct 270002 CTTGTCTTGCGTCGGCGTGGTGG 270024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| | ||||||||||| |||| | ||||||||||||||||||| ||| ||||| Sbjct 181766 AAAATTCACTACAAAGAAGGCATTCCTCTTGATCAACAAAGGCTTATTTTTGCTGGCAAG 181825 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || || ||| ||| | || ||||| || || || || |||||||| | || Sbjct 181826 CAGCATGAGGATGGCCGAACACTTGCTGATTACAACATCCAGAAGGAATCTACCATCCAC 181885 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||| ||| ||||| Sbjct 181886 CTTGTCTTGCGTCGGCGTGGTGG 181908 >seq172461 Length=351322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||||||||| |||| ||||| ||||||||||||| ||| ||||| Sbjct 152502 AAAATTCAGGACAAAGAAGGGATTCCTCCTGATCAGCAAAGGCTTATTTTTGCTGGCAAG 152443 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 152442 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 152383 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || |||| || ||| ||||| Sbjct 152382 CTTGTCTTGCCTCGGCGTGGTGG 152360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||||||||| |||| ||||| ||||||||||||| || ||||| Sbjct 276536 AAAATTCAGGACAAAGAAGGGATTCCTCCTGATCAGCAAAGGCTTATTTTTGGTGGCAAG 276477 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 276476 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 276417 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||| ||| ||||| Sbjct 276416 CTTGTCTTGCGTCGGCGTGGTGG 276394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| |||||||||||| |||| |||| ||||||||||||| ||| ||||| Sbjct 35672 AAAATTCAAGACAAAGAAGGCATTCCTCCTAATCAGCAAAGGCTTATTTTTGCTGGCAAG 35613 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || |||| ||| ||| |||| ||||| || || || || |||||||| | || Sbjct 35612 CAGCTGGAGGATGGCCGAACACTGGCTGATTACAACATTCAGAAGGAATCTACCATCCAC 35553 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | || |||||| ||| ||||| Sbjct 35552 CTTGTCTTGCGTTGGCGTGGTGG 35530 >seq1197656 Length=450275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| ||||| ||||| || ||||| |||| || ||||| || ||||| Sbjct 441077 GACAAGGAAGGAATTCCCCCTGATCAGCAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAA 441136 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| | ||| | || ||||| ||||| ||||| ||||| || || || | || ||| Sbjct 441137 GATGGGAGAACCCTAGCTGATTACAATATTCAAAAGGAATCCACCCTCCACCTTGTTTTG 441196 Query 111400 CGTCTGCGCGGTGG 111413 |||||||| ||||| Sbjct 441197 CGTCTGCGTGGTGG 441210 >seq929835 Length=122901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| ||||| |||||||| ||||| |||| || ||||| || ||||| Sbjct 5315 GACAAGGAAGGAATTCCCCCTGATCAACAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAA 5256 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| ||| | || ||||| ||||| ||||| ||||| || || || | | ||| Sbjct 5255 GATGGGCGAACCCTAGCTGATTACAATATTCAAAAGGAATCCACCCTCCACCTTATTTTG 5196 Query 111400 CGTCTGCGCGGTGG 111413 |||||||| ||||| Sbjct 5195 CGTCTGCGTGGTGG 5182 >seq810261 Length=116169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| ||||| ||||| || ||||| |||| || ||||| || ||||| Sbjct 98090 GACAAGGAAGGAATTCCCCCTGATCAGCAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAA 98149 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| ||| | || ||||| ||||| ||||| ||||| || || || | || ||| Sbjct 98150 GATGGGCGAACCCTAGCTGATTACAATATTCAAAAGGAATCCACCCTCCACCTTGTTTTG 98209 Query 111400 CGTCTGCGCGGTGG 111413 |||||||| ||||| Sbjct 98210 CGTCTGCGTGGTGG 98223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416664002593000