Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq930373 203 4e-47 seq284582 95.1 1e-14 seq759392 87.8 2e-12 seq137683 82.4 9e-11 >seq930373 Length=6908 Score = 203 bits (224), Expect = 4e-47 Identities = 831/1300 (64%), Gaps = 34/1300 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || ||||||| ||| ||| || || || ||||| | |||||| ||||||| ||||| Sbjct 2158 TACATATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGAT 2099 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGTTC 114060 || || ||||| ||||||||| ||| || | | ||| | | | | || | || Sbjct 2098 GCAGTAGGCATTGGTGCCATGGTCAGGGAATTTCTAATACCATGCTTCATGATATCTTTT 2039 Query 114061 CTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 114120 ||| ||| |||||| || | || | | | | ||||||||||||||| || Sbjct 2038 CTTAAGGT-GTCCCAATCCCACATGCCGTAGGGTTTTTGGTCCCACATATCAAACTGTAG 1980 Query 114121 GATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAA 114180 |||||||| || || || ||||| | || || |||||||| || || || || | Sbjct 1979 TATACCTTGAGAAGCAGGAGATCCTTGGAAAGTTTCGTATGGACCGTCCTTCTGAGCTAG 1920 Query 114181 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 114240 ||| | || || | || || ||||| || || ||||| || | ||| | Sbjct 1919 TTCACAAGAAGCTTCCATGGAGGCATGATAAATAGTTTCAAAGATTTGGATATTTAGCAA 1860 Query 114241 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 114300 ||| || || |||||||| | | || ||| || || || ||||||||||| Sbjct 1859 ACGGGCTTCCTCAGAATCAAATGGCAAACGTAACAGCATGAAAGTGTCAGCGAGACCTTG 1800 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATA 114360 ||||| | ||||||| | |||||||||||| || |||| || || || || || Sbjct 1799 AACACCCAAAGCAATTGGTCTATGTCTCATATTGGATTTTCTCGCTTCTTCAACAGGGTA 1740 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 |||| | ||| || || || |||| ||| || ||||| || | |||||||| | Sbjct 1739 GTAATTACGATCAATGACTCTGTTTAAATTACGAGTAACAACTTTAGCAATTTCATGTAA 1680 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCT---------------CTTCATTGACATACTTAGG 114465 |||| | | | | || ||||| |||| ||| || || || Sbjct 1679 TTTTTTGAAGTTGTATGTGGAAGTCTTACCATCCTCAGAAGTTTCAATGA-ATGCT--GG 1623 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 | ||| | || |||| ||||| |||| || ||||| | | | ||| || | ||| Sbjct 1622 TAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCATCTGGAGCTGAGTATTCAACAAT 1563 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 ||| || || ||||| ||| ||| || ||||| |||||||| || ||| |||| Sbjct 1562 TTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTT 1503 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 ||| ||||||||||||| | | | || || || || || ||||| | | | ||| | Sbjct 1502 ACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGA 1443 Query 114646 CTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 114705 | ||| | | |||| | ||| || | || || || | |||||| || Sbjct 1442 ATACCATAATTTTTGGGCTTTGATAGT---CTTACCACGACCTTCTTTCTCGTAGCGGGT 1386 Query 114706 GTAGAGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGAGCCCTGGTGCCTTAT-CTGG 114762 || || || |||||||| ||||| || | || | | || || | || || ||| Sbjct 1385 ATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAA--CCAGGAG-CTGATGTTGG 1329 Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 |||| | | ||| ||| || || |||||||||||||| || || || ||||| Sbjct 1328 AGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAATCCA 1269 Query 114823 GAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 114882 ||||| | ||| | ||| | ||| ||| || | || || || | | || Sbjct 1268 TAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATC 1209 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCT 114938 | ||| || | ||||| || ||||| ||||||||||| | || | | ||| || Sbjct 1208 AATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCT 1149 Query 114939 TACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | | |||| |||||| ||||| | || ||| ||| || || |||| ||| |||| Sbjct 1148 T-TTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACGAATCATAGGAA 1090 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCAT 115058 | | ||| | ||| || ||||| || ||| ||| | | | | | | || Sbjct 1089 TTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTAT 1030 Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118 |||| || | ||||||||| || || || || || || || ||| | | || Sbjct 1029 GGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGT 970 Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTG 115178 |||| ||||| ||||| ||||| |||| | || | | ||| || |||||||| | Sbjct 969 CGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTTGAG 910 Query 115179 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 115218 | |||| ||||| || ||||| | ||||| | ||||| Sbjct 909 GTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTG 870 >seq284582 Length=29610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 355/556 (64%), Gaps = 3/556 (1%) Strand=Plus/Plus Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 ||||| | |||||| || |||| || ||||||||||||||| || | ||| Sbjct 3076 CCCTCTTGCTCGTATTTCATGTACAGTTTCTCAAACTCTTCACCCCAACAATCAGCAAGC 3135 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || |||| | || | || || | | |||| | | ||||| || | ||||| Sbjct 3136 CCAGGTGTTTCATTGTGACAAAATAATGTCCATGTAGAATTCTCCTGGACCCTTTTCATA 3195 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 ||||||||||| | ||| ||||| | || ||||| || | ||||| | ||| Sbjct 3196 AAGAGGTCTGGCACCCAAAGAGCAAAAAATAGATCACGTGCTCTGTTCTCTTCCTTCCCA 3255 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 || || | ||| |||| ||| || | | ||| || ||||| || || | ||||| Sbjct 3256 TGGTTCTTTCTCAAATCCAGAAACTCAAAAACATCTGCATGCCATGGCTCTAAGTACATG 3315 Query 114926 GCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982 || | || ||||| | | ||| | |||| ||||| | || || |||| ||| Sbjct 3316 GCAAAGGAACCCTTCCTCTTGCCTCCACCTTGGTCAACATATCGAGCAGTATCATTGAAT 3375 Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTA 115042 || | | |||||| ||||||| |||| ||||||||| || || ||| | || Sbjct 3376 ACCCTCAACATTGGCGCAATACCATTAGATGTGCCATTTGTTCCTCGGATATAACTACTA 3435 Query 115043 TTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 115102 | || | | | ||| | | ||||| || ||||| | || ||| || Sbjct 3436 GTTGCACGAATGTTATGCACTGAAACACCAAGTCCTCCTGCTGATTTGCTTATTACAGCA 3495 Query 115103 CACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAG 115162 |||||| | | | | | || || || || || ||| | || | | ||||||| Sbjct 3496 CACTCCTTTAAAGTATCATATATTCCCTCAATGCTATCATCTTTCATGTAAAAAAGGAAG 3555 Query 115163 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 115222 || || ||| |||||||||||||| ||||| ||||| || || | | || ||| || Sbjct 3556 CAACTACTCATCTGTGGCCTTGGTGTCCCAGCATTGAAAAGTGTCGAAGAAGCATGGGTG 3615 Query 115223 AACATACCTTGGGACA 115238 ||| || ||| |||| Sbjct 3616 AACCAACGTTGTGACA 3631 >seq759392 Length=161938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 357/559 (64%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 ||||| | || ||| || |||| || ||||| ||||||||| || | ||| Sbjct 23278 CCCTCTTACTTGTATTTCATGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCAAGC 23219 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || ||||| | || || || || | | |||| | | ||||| || | ||||| Sbjct 23218 CCAGGTGCTTCATTGGGACAAAATAATGTCCATGTATAATTCTCCTGGACCCTTTTCATA 23159 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 ||||||||||| | ||| ||||| | | ||||| || | | ||||| | ||| Sbjct 23158 AAGAGGTCTGGCACCCAAAGAGCAAAATATAGATCACGTGCTCTATTCTCTTCCTTCCCA 23099 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 || || | ||| |||| ||| || | | ||| || ||||| || || | ||||| Sbjct 23098 TGGTTCTTTCTCAAATCCAGAAACTCAAAAACATCTGCATGCCATGGCTCTAAGTACATG 23039 Query 114926 GCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982 || | | ||||| | | ||| | |||| ||||| | || || |||| ||| Sbjct 23038 GCAAAGGCACCCTTCCTCTTGCCTCCACCTTGGTCAACATATCGAGCAGTAACATTGAAT 22979 Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTA 115042 || | | |||||| | ||||||| |||| ||||||||| || || ||| | | Sbjct 22978 ACCCTCAACATTGGCACAATACCATTAGATGTGCCATTTGTTCCTCGGATATAACTACCA 22919 Query 115043 TTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 115102 | || | | | ||| | | ||||| || ||||| | || ||| || Sbjct 22918 GTTGCACAAATGTTATGCACTGAAACACCAAGTCCTCCTGCTGATTTGCTTATTACAGCA 22859 Query 115103 CACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATT--TGC-GATAAGG 115159 |||||| | | | | | || || || || || || | | | || ||| | |||| Sbjct 22858 CACTCCTTTAAAGTATCATATATTCCCTCAAT---GTTATCATATTTCATGCAAACAAGG 22802 Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 ||||| || ||| |||||||||||| | ||||| ||||| || || || | || ||| Sbjct 22801 AAGCAACTACTCATCTGTGGCCTTGGTTTCCCAGCATTGAAAAGTGTCGGAGAAGCATGG 22742 Query 115220 ATGAACATACCTTGGGACA 115238 ||||| || ||| |||| Sbjct 22741 GTGAACCAACGTTGTGACA 22723 >seq137683 Length=1137553 Score = 82.4 bits (90), Expect = 9e-11 Identities = 229/351 (65%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 ||||| | |||||| ||| |||| || ||||| ||||||||| || | ||| Sbjct 947933 CCCTCTTGCTCGTATTTTATGTACAGTTTGTCAAATTCTTCACCCCAACAATCAGCAAGC 947874 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || ||||| | || || || || | | |||| | | ||||| || | ||||| Sbjct 947873 CCAGGTGCTTCATTGGGACAAAATAATGTCCATGTAGAATTCTCCTGGACCCTTTTCATA 947814 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 ||||||||||| | ||| |||| | || ||||| || | ||||| | ||| Sbjct 947813 AAGAGGTCTGGCACCCAAAGAGAAAAAAATAGATCACGTGCTCTGTTCTCTTCCTTCCCA 947754 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 || || | ||| |||| ||| || | | ||| || ||||| || || | ||||| Sbjct 947753 TGGTTCTTTCTCAAATCCAGAAACTCAAAAACATCTGCATGCCATGGCTCTAAGTACATG 947694 Query 114926 GCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982 | | | ||||| | | ||| | |||| ||||| | || || |||| ||| Sbjct 947693 GAAAAGGCACCCTTCCTCTTGCCTCCACCTTGGTCAACATATCGAGCAGTATCATTGAAT 947634 Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 115033 || | | |||||| | ||||||| |||| ||||||||| || ||||| Sbjct 947633 ACCCTCAACATTGGCACAATACCATTAGATGTGCCATTTGTTCCTTGAATA 947583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588119521378200