Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq188300 111 6e-20 >seq188300 Length=303 Score = 111 bits (122), Expect = 6e-20 Identities = 205/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 60968 TCCCGCCAGCCTGACAAAGCTGATGACGGGCTATGTCGTGGATCGCGCTATCGATAGTCA 61027 ||||||||||||||| || |||||||| || || || || |||||||| || || | Sbjct 303 TCCCGCCAGCCTGACCAAACTGATGACCGGTTACGTGGTCGATCGCGCCATTGACCAGAA 244 Query 61028 TCGCATTACGCCAGACGATATTGTCACCGTGGGGCGCGATGCGTGGGCGAAAGATAATCC 61087 || | | ||||| || || || || || ||||| |||||| | |||||| Sbjct 243 GAAAATCAGCCGGGACGACATGGTTACGGTCGGAAAAGATGCCTGGGCGGCGGGTAATCC 184 Query 61088 AGTGTTTGTCGGTTCTTCACTGATGTTTTTGAAAGAGGGCGATC-GCGTATCGGTACGTG 61146 ||||| || || || |||||||| |||| |||||| || | || | || | Sbjct 183 GGTGTTCAAAGGCTCCTCGCTGATGTTCCTGAAGCCAGGCGATAAGCTGAGCG-TCCGGG 125 Query 61147 ATTTAAGCCGTGGTTTAATTGTGGATTCCGGAAATGACGCTTGTGTTGCACTGGCTGACT 61206 ||||||||||||| | || | || ||||| || ||||| || ||||| |||||||| | Sbjct 124 ATTTAAGCCGTGGCGTCATCATCGACTCCGGTAACGACGCCTGCGTTGCCCTGGCTGATT 65 Query 61207 ATATTGCCGGTGGGCAACGGCAGTTTGTTGAAATGATGAACAACTATGCCGAGAAGCT 61264 || | || || | || | | || || | |||||||| |||| | || ||||| Sbjct 64 ATGTGGCGGGCAGCGAAGCGAACTTCGTCGGCATGATGAATCACTACGTTGAAAAGCT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195830094993570