Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_012696.1 Length=73325 Score E Sequences producing significant alignments: (Bits) Value seq773576 91.5 7e-14 seq308694 84.2 1e-11 >seq773576 Length=412 Score = 91.5 bits (100), Expect = 7e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 58454 CACACCATTGGCGTCGATACCTTGGTCGTTCACGTTCAGATCATCCAGCAGCGGGACGTA 58513 ||| |||||||| || |||||||||||||| | ||| ||||||||||| |||| ||| Sbjct 206 CACGCCATTGGCATCAATACCTTGGTCGTTGATGTTGGCGTCATCCAGCAGGGGGATGTA 265 Query 58514 GTAGAACACTTTCAGTTCCTTACCGAAGTTTTTCGGCATGGACTTGGCGTCAGCCAGC 58571 || |||| || | | |||||||||||| |||||||| || | | ||||| ||| Sbjct 266 GTGGAACTTCTTGATCTTCTTACCGAAGTTCTTCGGCATAGAAGTCACATCAGCAAGC 323 >seq308694 Length=301 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 66270 TTGTCATAGGCCCAAACAGAAATCACTGTGTAATCAGCAGTTTGCTTGGAAGAAGTGGCA 66329 |||| ||||||||| || || || || | | | ||||| | |||||| |||||| ||| Sbjct 3 TTGTTATAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCA 62 Query 66330 AAGTCAGTGGTGATGTAGAAGTTGTAGTGCTTCCTATTGGACAAGAT---GTCCATCCGA 66386 ||||||||||||||||||||||| | | | | | || || || |||| | | Sbjct 63 AAGTCAGTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAGAATAGAATCCAACTTA 122 Query 66387 GACTTCCAACCAATCTCATCTTGTTGAATCAGACGAGACTCATCTGAGGTAATCCGAAGC 66446 | ||||||||| ||| | | |||||||| ||| || || || | || || ||| Sbjct 123 AA---CCAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGC 179 Query 66447 ATGAGTTCCTG 66457 || || ||||| Sbjct 180 ATTAGCTCCTG 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230980620983590