Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_013692.1 Length=72544 Score E Sequences producing significant alignments: (Bits) Value seq308694 113 2e-20 seq1028318 91.5 7e-14 >seq308694 Length=301 Score = 113 bits (124), Expect = 2e-20 Identities = 203/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 67709 TAGGCCCAGACACTGATGATGCTGAAGTCACTGGCCTTCTTCGCAGAGGTAGCGAAGTCA 67768 ||||||||||| ||||| ||||||| || ||| ||| ||||| |||||| Sbjct 9 TAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAAGTCA 68 Query 67769 GTAGTGACGTAGAAGTTGTACCGCTTCTTGTTGTCCAGCAC-GTTGCGACGCATGTACCA 67827 || |||| ||||||||| | || | |||||| | ||| | | | | | | |||| Sbjct 69 GTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAGAATAGAATCCAA-CTTAAACCA 127 Query 67828 AGCCACCTCACCATCCTGGATGAGTCGGTCTTCGTCGGACATGATCTGGAGCATAAGCTC 67887 | | | |||||||| || || | || ||||| || |||||||| | ||||| ||||| Sbjct 128 ACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAGCTC 187 Query 67888 CTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAA 67947 ||||||||| || || | || |||| ||||| | |||| | | ||| | Sbjct 188 CTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGACGTA 247 Query 67948 GTCATAGGTGAAGCGGTCAGGCCATGCACCACGGAACTCTTCCCTTGAGCAGGG 68001 ||||| ||||| || |||||||| | ||| | ||| |||||| | ||||| || Sbjct 248 CTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCCTTGGAGCAAGG 301 >seq1028318 Length=438 Score = 91.5 bits (100), Expect = 7e-14 Identities = 188/277 (68%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 39631 TCATGACGCAAGTGAACGACCATCTGGTCTTGGTTTCTGGTCTGTCCGCTACTGGCAAGT 39690 ||||| | ||| || ||||||||||| ||| | || ||| ||||||||||| | Sbjct 318 TCATGTCTCAAACCAATGACCATCTGGTATTGCTCGTAGGCAAGTCTGCTACTGGCAAAT 259 Query 39691 CTGCCTGTCTGCGGAATCTCCGGGAGCCGGAGAAGG--TCATCTACCTGAACTGCGAGGC 39748 | || | ||| | || || | |||| |||||| | || || |||||||| ||| Sbjct 258 CAGCATCTCTCCTTAACCTTGAGAAGCC--AGAAGGAGTGATGTATCTGAACTGTGAGAA 201 Query 39749 CGGTAAGCGGCTGCCGTTCAAGTCCCGCTTCATCGAGCGGACGGTGACCGATCCCTACCA 39808 ||| ||| |||| ||||| | ||||| || |||||| ||||||||||| || Sbjct 200 CGGCAAGAAATTGCCTTTCAAAAGCAAGTTCATGCAGTTGACGGTTACCGATCCCTATCA 141 Query 39809 GATCCCCACCGTCTTCGACGCAGTGGTGGAAGGGAAGGTAGAAGCCCACACCATCATCAT 39868 | | | |||| | ||||| ||| ||| ||| ||| |||||| |||| Sbjct 140 GCTTTTTGAAGCCTTCCA---AGTGGCTGAATCAAAGCCAGAGATCCATACCATCGTCAT 84 Query 39869 CGACACCCTCACCTACCTGCTGGACATGTACGAGTCC 39905 ||||| || ||||| || ||||| |||| |||||| Sbjct 83 CGACAGTCTGACCTATCTTCTGGATATGTTTGAGTCC 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228519088562825