Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq930373 158 1e-33 seq137683 93.3 5e-14 seq1178007 86.0 7e-12 seq710657 86.0 7e-12 seq540533 86.0 7e-12 seq999246 84.2 3e-11 >seq930373 Length=6908 Score = 158 bits (174), Expect = 1e-33 Identities = 785/1240 (63%), Gaps = 25/1240 (2%) Strand=Plus/Minus Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977 ||||||||||| || |||| ||| | || ||||||||| || | |||| | ||||| Sbjct 1999 TCCCACATATCAAACTGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAAGTTTCGTAT 1940 Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037 | || || || || | || | ||||| || | | |||||||| ||||| ||| Sbjct 1939 GGACCGTCCTTCTGAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAAATAGTTTCA 1880 Query 110038 AAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATA 110097 || || || ||| | | || | || ||| | || || || | || | || || Sbjct 1879 AAGATTTGGATATTTAGCAAACGGGCTTCCTCAGAATCAAATGGCAAACGTAACAGCATG 1820 Query 110098 AACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT 110157 || || || ||||| |||||||| | | |||| || | ||| |||| || || | Sbjct 1819 AAAGTGTCAGCGAGACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATTTT 1760 Query 110158 CGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACA 110217 | || ||| || ||||| | || || || ||||| | || | ||| || ||| Sbjct 1759 CTCGCTTCTTCAACAGGGTAGTAATTACGATCAATGACTCTGTTTAAATTACGAGTAACA 1700 Query 110218 GTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT------CCTTA--- 110268 || | |||||||| | ||| | | | | | | || |||| ||| | Sbjct 1699 ACTTTAGCAATTTCATGTAATTTTTTGAAGTTGTATGTGGAAGTCTTACCATCCTCAGAA 1640 Query 110269 -TTGACATATTTG--GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 || || || || | |||| || || | || || |||| ||| || ||| Sbjct 1639 GTTTCAATGAATGCTGGTAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCATCTGGA 1580 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 | | |||||| | |||||| || ||||| || ||| |||||||| ||||| || Sbjct 1579 GCTGAGTATTCAACAATTTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTT 1520 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 ||||| ||||| ||| || |||||||| || | | | | || ||||||||||| || Sbjct 1519 TGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTT 1460 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCT 110505 || | | | ||||| | ||||| | ||| || ||| ||| | ||||| Sbjct 1459 TGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTTTGATAGTC---TTACCACGACCT 1403 Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565 || | |||||| ||| || | ||||||| || | ||||| ||| | ||| Sbjct 1402 TCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAACCA 1343 Query 110566 TTCGCCT-TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624 || ||| || | |||| | | ||| | ||| || || || | ||||||||| Sbjct 1342 GGAGCTGATGTTGG-AGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAA 1284 Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 || ||||||||||| | || | ||| | || | |||| || || | ||| || Sbjct 1283 AAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTG 1224 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| | | || | ||| || | ||||| | ||||||||||| || || | || Sbjct 1223 GTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGC 1164 Query 110745 GATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | | || ||| | ||| |||||| |||||| || || ||| |||||| | Sbjct 1163 AAACGCACCAGGTCTT-TTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAA 1105 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860 | | | ||||||||| | || | || ||| |||||||| ||| || | Sbjct 1104 CACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAG 1045 Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920 | | |||||||| |||||||| | |||||||||||| || || ||| |||| Sbjct 1044 TTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCAC 985 Query 110921 ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 | || | | || | ||||| || || || || || |||| |||||| | || | Sbjct 984 ATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAAC 925 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 |||| ||||| ||||| || || || |||||||| | || || | || ||| | | Sbjct 924 AAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGT-A 866 Query 111041 ACAGACCTT-GGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGA 111099 | | | || | |||||| ||| || || || | || | | |||| ||||||| Sbjct 865 AAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCTCTACCGTGG 806 Query 111100 ATACCAATGGCAACTCGCATGAACATATATTGAGG-CGTT 111138 || || | || |||| ||| | | || ||| || |||| Sbjct 805 ATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTT 766 >seq137683 Length=1137553 Score = 93.3 bits (102), Expect = 5e-14 Identities = 284/436 (65%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 109515 CTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTC 109574 |||||| || | | || ||||| ||| |||||||| | | | ||| |||| || Sbjct 948969 CTGATCTATATAACAACTACGATTAGCTGCCATGTCCACAAGTGTCCGTTGTTTAATATC 948910 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| |||||| |||| | | ||| | || || ||||| || ||||||||||| || Sbjct 948909 CCATACAGTCCTGTAAATAGCCTTAAGTTCCTCTGGAATCTCGCTGATGTTTTGAACTGA 948850 Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCG---ACCAGAGACCGACCTTTTT 109691 |||| | |||| || ||| | | | |||| || || | | | Sbjct 948849 ---ACCATTGTGATAGATGACTTCATTCTTAAAAGTAGGAGACCATAGTCCCATGTCAGT 948793 Query 109692 GAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 | ||| | || |||||| ||||| ||||| |||||||||||| | || | || Sbjct 948792 TAAATCATGAAGAAGATGTTTGTTCACCACCACAAATTCACCACTCAATGCTCTTCTACT 948733 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| || || | || || ||||| || ||||||||||| || || ||||| ||| || Sbjct 948732 GTAAATATTTGATGTATAAGGTTCAAAGCACTCATTGTTCCCAAGAATTTGACTAGTTGA 948673 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT--TACCCGC 109869 || || ||||| ||||| | |||||| ||||| | || | || || |||| Sbjct 948672 TGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTCTCACGCCAT--GTTTTACTACCATG 948615 Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCT 109929 || | | |||||||| |||||| || | ||| || ||||||| ||| Sbjct 948614 TCCCTTAGCAGATCCCAATCCTAACGATCAGAAGGTTT------TACACCCCACATGTCT 948561 Query 109930 GGTTGAAGTACACCCT 109945 |||||||||| |||| Sbjct 948560 GGTTGAAGTATTCCCT 948545 >seq1178007 Length=137947 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || ||| || |||||||| | || ||||||||||| || || ||| Sbjct 95767 GCAAAGTCACAATGGAGACCTTCATCTCTTGAAATGAGCTCATTGGAAAATGTTAGACCA 95708 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAA 119607 ||||| |||||||||||||| ||||||||||| |||||||| || | | ||| Sbjct 95707 GGCATCAGTCCTCTTTTCTTCAGCCAAAAGATTGCACAAAAGCTACAACAAA 95656 >seq710657 Length=1012716 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || ||||| || || ||||||||||| ||| || |||||||| | ||| Sbjct 959836 TGAAGACCCTCATCTCGTGAAATGAGCTCATTGGAGAATGTTAGACCAGGCATCAATCCC 959777 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACT 119599 |||||||| ||||||||||| ||||||||||| Sbjct 959776 CTTTTCTTCAGCCAAAAGATTGCACAAAAACT 959745 >seq540533 Length=86685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/283 (67%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 109568 TAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTT 109627 |||| ||||| |||||| |||| | | ||| | || || ||||| || |||||||| Sbjct 43864 TAATCTCCCATACAGTCCTGTAAATAGCCTTAAGTTCCTCTGGAATCTCGCTGATGTTTT 43805 Query 109628 GAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCT---CTTTCGACCAGAGACCGA 109684 ||| || |||| | |||| || ||| || | ||||| || || | Sbjct 43804 GAACTGA---ACCATTGTGATAGATGACTTCATTCTTCAAAGCAGGAGACCATAGCCCCA 43748 Query 109685 CCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTG 109743 | | | ||| | || |||||| ||||| ||||| |||||||||||| ||| | Sbjct 43747 TGTCAGTTAAATCATGAAGAAGATGTTTGTTCACCACCACAAATTCACCACTCAACACT- 43689 Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 | || ||| || || | || || |||||||| ||||||||||| || || ||||| Sbjct 43688 CTTCTACTGTAAATATTTGATGTATAAGGTTCGAAGCACTCATTGTTCCCAAGAATTTGA 43629 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| || || || ||||| ||||| | |||||| ||||| Sbjct 43628 CTAGTTGATGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTC 43586 >seq999246 Length=803031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || ||| || |||||||| || || |||||||||||| ||| | | | Sbjct 34516 GCAAAGTCACAATGGAGACCTTCATCTCGTGAAATGAGCTCATTAGAGAACGTCATACTA 34575 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACT 119599 ||||| | ||| |||||||||||||||| ||| ||||||||||| Sbjct 34576 GGCATCAATCCCCTTTTCTTTAGCCAAATGATTGCACAAAAACT 34619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579871424937000