Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq930373 158 1e-33
seq137683 93.3 5e-14
seq1178007 86.0 7e-12
seq710657 86.0 7e-12
seq540533 86.0 7e-12
seq999246 84.2 3e-11
>seq930373
Length=6908
Score = 158 bits (174), Expect = 1e-33
Identities = 785/1240 (63%), Gaps = 25/1240 (2%)
Strand=Plus/Minus
Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977
||||||||||| || |||| ||| | || ||||||||| || | |||| | |||||
Sbjct 1999 TCCCACATATCAAACTGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAAGTTTCGTAT 1940
Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037
| || || || || | || | ||||| || | | |||||||| ||||| |||
Sbjct 1939 GGACCGTCCTTCTGAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAAATAGTTTCA 1880
Query 110038 AAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATA 110097
|| || || ||| | | || | || ||| | || || || | || | || ||
Sbjct 1879 AAGATTTGGATATTTAGCAAACGGGCTTCCTCAGAATCAAATGGCAAACGTAACAGCATG 1820
Query 110098 AACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT 110157
|| || || ||||| |||||||| | | |||| || | ||| |||| || || |
Sbjct 1819 AAAGTGTCAGCGAGACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATTTT 1760
Query 110158 CGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACA 110217
| || ||| || ||||| | || || || ||||| | || | ||| || |||
Sbjct 1759 CTCGCTTCTTCAACAGGGTAGTAATTACGATCAATGACTCTGTTTAAATTACGAGTAACA 1700
Query 110218 GTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT------CCTTA--- 110268
|| | |||||||| | ||| | | | | | | || |||| ||| |
Sbjct 1699 ACTTTAGCAATTTCATGTAATTTTTTGAAGTTGTATGTGGAAGTCTTACCATCCTCAGAA 1640
Query 110269 -TTGACATATTTG--GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325
|| || || || | |||| || || | || || |||| ||| || |||
Sbjct 1639 GTTTCAATGAATGCTGGTAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCATCTGGA 1580
Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385
| | |||||| | |||||| || ||||| || ||| |||||||| ||||| ||
Sbjct 1579 GCTGAGTATTCAACAATTTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTT 1520
Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445
||||| ||||| ||| || |||||||| || | | | | || ||||||||||| ||
Sbjct 1519 TGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTT 1460
Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCT 110505
|| | | | ||||| | ||||| | ||| || ||| ||| | |||||
Sbjct 1459 TGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTTTGATAGTC---TTACCACGACCT 1403
Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565
|| | |||||| ||| || | ||||||| || | ||||| ||| | |||
Sbjct 1402 TCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAACCA 1343
Query 110566 TTCGCCT-TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624
|| ||| || | |||| | | ||| | ||| || || || | |||||||||
Sbjct 1342 GGAGCTGATGTTGG-AGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAA 1284
Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684
|| ||||||||||| | || | ||| | || | |||| || || | ||| ||
Sbjct 1283 AAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTG 1224
Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744
||| | | || | ||| || | ||||| | ||||||||||| || || | ||
Sbjct 1223 GTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGC 1164
Query 110745 GATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800
| | || ||| | ||| |||||| |||||| || || ||| |||||| |
Sbjct 1163 AAACGCACCAGGTCTT-TTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAA 1105
Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860
| | | ||||||||| | || | || ||| |||||||| ||| || |
Sbjct 1104 CACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAG 1045
Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920
| | |||||||| |||||||| | |||||||||||| || || ||| ||||
Sbjct 1044 TTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCAC 985
Query 110921 ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980
| || | | || | ||||| || || || || || |||| |||||| | || |
Sbjct 984 ATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAAC 925
Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040
|||| ||||| ||||| || || || |||||||| | || || | || ||| | |
Sbjct 924 AAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGT-A 866
Query 111041 ACAGACCTT-GGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGA 111099
| | | || | |||||| ||| || || || | || | | |||| |||||||
Sbjct 865 AAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCTCTACCGTGG 806
Query 111100 ATACCAATGGCAACTCGCATGAACATATATTGAGG-CGTT 111138
|| || | || |||| ||| | | || ||| || ||||
Sbjct 805 ATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTT 766
>seq137683
Length=1137553
Score = 93.3 bits (102), Expect = 5e-14
Identities = 284/436 (65%), Gaps = 16/436 (4%)
Strand=Plus/Minus
Query 109515 CTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTC 109574
|||||| || | | || ||||| ||| |||||||| | | | ||| |||| ||
Sbjct 948969 CTGATCTATATAACAACTACGATTAGCTGCCATGTCCACAAGTGTCCGTTGTTTAATATC 948910
Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634
||| |||||| |||| | | ||| | || || ||||| || ||||||||||| ||
Sbjct 948909 CCATACAGTCCTGTAAATAGCCTTAAGTTCCTCTGGAATCTCGCTGATGTTTTGAACTGA 948850
Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCG---ACCAGAGACCGACCTTTTT 109691
|||| | |||| || ||| | | | |||| || || | | |
Sbjct 948849 ---ACCATTGTGATAGATGACTTCATTCTTAAAAGTAGGAGACCATAGTCCCATGTCAGT 948793
Query 109692 GAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751
| ||| | || |||||| ||||| ||||| |||||||||||| | || | ||
Sbjct 948792 TAAATCATGAAGAAGATGTTTGTTCACCACCACAAATTCACCACTCAATGCTCTTCTACT 948733
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||| || || | || || ||||| || ||||||||||| || || ||||| ||| ||
Sbjct 948732 GTAAATATTTGATGTATAAGGTTCAAAGCACTCATTGTTCCCAAGAATTTGACTAGTTGA 948673
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT--TACCCGC 109869
|| || ||||| ||||| | |||||| ||||| | || | || || ||||
Sbjct 948672 TGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTCTCACGCCAT--GTTTTACTACCATG 948615
Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCT 109929
|| | | |||||||| |||||| || | ||| || ||||||| |||
Sbjct 948614 TCCCTTAGCAGATCCCAATCCTAACGATCAGAAGGTTT------TACACCCCACATGTCT 948561
Query 109930 GGTTGAAGTACACCCT 109945
|||||||||| ||||
Sbjct 948560 GGTTGAAGTATTCCCT 948545
>seq1178007
Length=137947
Score = 86.0 bits (94), Expect = 7e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555
||||| || ||| || |||||||| | || ||||||||||| || || |||
Sbjct 95767 GCAAAGTCACAATGGAGACCTTCATCTCTTGAAATGAGCTCATTGGAAAATGTTAGACCA 95708
Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAA 119607
||||| |||||||||||||| ||||||||||| |||||||| || | | |||
Sbjct 95707 GGCATCAGTCCTCTTTTCTTCAGCCAAAAGATTGCACAAAAGCTACAACAAA 95656
>seq710657
Length=1012716
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
||||| || ||||| || || ||||||||||| ||| || |||||||| | |||
Sbjct 959836 TGAAGACCCTCATCTCGTGAAATGAGCTCATTGGAGAATGTTAGACCAGGCATCAATCCC 959777
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACT 119599
|||||||| ||||||||||| |||||||||||
Sbjct 959776 CTTTTCTTCAGCCAAAAGATTGCACAAAAACT 959745
>seq540533
Length=86685
Score = 86.0 bits (94), Expect = 7e-12
Identities = 191/283 (67%), Gaps = 8/283 (3%)
Strand=Plus/Minus
Query 109568 TAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTT 109627
|||| ||||| |||||| |||| | | ||| | || || ||||| || ||||||||
Sbjct 43864 TAATCTCCCATACAGTCCTGTAAATAGCCTTAAGTTCCTCTGGAATCTCGCTGATGTTTT 43805
Query 109628 GAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCT---CTTTCGACCAGAGACCGA 109684
||| || |||| | |||| || ||| || | ||||| || || |
Sbjct 43804 GAACTGA---ACCATTGTGATAGATGACTTCATTCTTCAAAGCAGGAGACCATAGCCCCA 43748
Query 109685 CCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTG 109743
| | | ||| | || |||||| ||||| ||||| |||||||||||| ||| |
Sbjct 43747 TGTCAGTTAAATCATGAAGAAGATGTTTGTTCACCACCACAAATTCACCACTCAACACT- 43689
Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803
| || ||| || || | || || |||||||| ||||||||||| || || |||||
Sbjct 43688 CTTCTACTGTAAATATTTGATGTATAAGGTTCGAAGCACTCATTGTTCCCAAGAATTTGA 43629
Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846
||| || || || ||||| ||||| | |||||| |||||
Sbjct 43628 CTAGTTGATGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTC 43586
>seq999246
Length=803031
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555
||||| || ||| || |||||||| || || |||||||||||| ||| | | |
Sbjct 34516 GCAAAGTCACAATGGAGACCTTCATCTCGTGAAATGAGCTCATTAGAGAACGTCATACTA 34575
Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACT 119599
||||| | ||| |||||||||||||||| ||| |||||||||||
Sbjct 34576 GGCATCAATCCCCTTTTCTTTAGCCAAATGATTGCACAAAAACT 34619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579871424937000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |