Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq551685 156 5e-33 seq159776 107 2e-18 seq555823 104 3e-17 seq974195 86.0 7e-12 seq342775 86.0 7e-12 seq1152054 82.4 9e-11 seq1044444 82.4 9e-11 seq756854 82.4 9e-11 >seq551685 Length=11734 Score = 156 bits (172), Expect = 5e-33 Identities = 359/537 (67%), Gaps = 9/537 (2%) Strand=Plus/Plus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||| || |||||||| || || |||||||| ||||||| |||||||| || ||| Sbjct 7069 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 7128 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 |||||||| || ||||| | |||||| ||||| | ||| || || | ||||| || || Sbjct 7129 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 7188 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || || || | |||||||| | ||||| || || || | | ||| || | | Sbjct 7189 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCA 7248 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC---AATTGTT 37403 || ||||||| || | ||| || ||||| | | | ||| || || Sbjct 7249 GCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTT---CTCACCGATTTCTGGGATGGTG 7305 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 | ||| || || || | || | |||||| | || | || || ||||| || | Sbjct 7306 TGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGTATCGATCAAC 7365 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 || || |||||||||||||||||||||| || || ||||| || |||| | | Sbjct 7366 AAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTT 7425 Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 || || | | ||| || ||| | | || | | | | |||||||||||||| || || Sbjct 7426 GCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCG 7485 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATA 37641 ||| ||| || || || |||||||| || ||| ||| || | | || || Sbjct 7486 TCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTCATT 7545 Query 37642 AT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | || ||||| |||| ||||| || || ||||||| ||| ||| ||||||| ||| Sbjct 7546 CTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAA 7602 >seq159776 Length=731372 Score = 107 bits (118), Expect = 2e-18 Identities = 116/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| |||||||||||||| || || |||||||| || | |||||| ||||| ||||| Sbjct 718215 ACAAGCAAAATCACAATGAAAGCCCTCATCTCTTGAAATAATTTCATTGGAAAA-GTTAA 718157 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGA 37293 |||||||| ||||| | ||| || | ||||||||| || |||||| |||| | |||| Sbjct 718156 ACCTGGCATCAAACCCCGTTTCTTCAACCAAAATATGGC-ACAAAAGTTTCCAAAGAAGA 718098 Query 37294 AAATACCTTCAACTGCTGCAAATGCTACAA 37323 |||||| |||| |||||||| |||| Sbjct 718097 AAATACTCTCAATACATGCAAATGTAACAA 718068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| | |||||||||||| || || |||||||| || | ||||| ||||| ||||| Sbjct 722870 ACAAGTAAAATCACAATGAAAGCCCTCATCTCTTGAAATAAGCTCATTGGAAAA-GTTAA 722812 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGA 37293 ||| |||| ||||| | ||| || | ||||||||| || |||||| |||| | |||| Sbjct 722811 ACCTAGCATCAAACCCCGTTTCTTCAACCAAAATATGGC-ACAAAAGTTTCCAAAGAAGA 722753 Query 37294 AAATACCTTCAACTGCTGCAAATG 37317 |||||| |||| |||||||| Sbjct 722752 AAATACTCTCAATACATGCAAATG 722729 >seq555823 Length=1742627 Score = 104 bits (114), Expect = 3e-17 Identities = 261/395 (66%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 |||||| || || || | ||| || | |||||| || || ||| |||||| || || Sbjct 1008553 TCCTGGAATCAAGCCCCATTTCTTCAACCAAAACATGGCACAAAATCTTCCAGAGAATAA 1008494 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 |||||| ||||| |||||||| |||| | | || || ||||| | || Sbjct 1008493 AATACCCTCAACACATGCAAATGTAACAATTC---TCTCGGAAAATGAACCAGAACTCTC 1008437 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 ||||||| | ||| || | ||| | |||||| ||| || | || || || Sbjct 1008436 AATCCATCGCAGGGCCCATTCAACTTTTCTTGCAACACAGCGAATAGTGTTGATGGCATT 1008377 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || || | |||||| | |||| |||| ||||| || | | || | ||||| Sbjct 1008376 GAACAGTTTCTCTTTTTCCTTGAAATCTCTTATGTAAGTTTCTAAAATTAGGTTGTACAT 1008317 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 |||||| |||||||| || || | |||||||| ||||| || || ||| || | Sbjct 1008316 TTCAGAATGAATATTCTCTATGGAAATCTGAAACCCATAGAATGCCCGAGCCTCCAGGAT 1008257 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||||||||| || || || || |||||| || || ||| || ||||| || || Sbjct 1008256 TTGAACATCCTTCAAGAATCTTCCAGCTAAATTCTCCAAAACAATACCATCTGAGGCCGC 1008197 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 ||| || || | ||||| |||| |||| ||||| Sbjct 1008196 AAAAAAGGCCAAAACATGGCTTATGAAAT-TCTTT 1008163 >seq974195 Length=173501 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||| |||||||| | ||||||||||| || | |||||| || || ||| Sbjct 169158 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 169099 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 | |||||||||| ||| ||||| || | |||||| |||| ||||||||| || || Sbjct 169098 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAAAGATGCAAAA 169043 >seq342775 Length=45875 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || |||||||| |||||||| | ||||||||||| || | |||||| || || ||| Sbjct 1533 AAGCATGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 1474 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 | |||||||||| ||| ||||| || | |||||| |||| ||||||| | || || Sbjct 1473 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAAAGCTGCAAAA 1418 >seq1152054 Length=76245 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||| |||||||| | ||||||||||| || | |||||| || || ||| Sbjct 41869 AAGCAAGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGAGAACGTT 41810 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 | |||||||||| ||| ||||| || | |||||| |||| ||||||| | || || Sbjct 41809 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAAAGCTGCAAAA 41754 >seq1044444 Length=78423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||| |||||||| | ||||||||||| || | |||||| || || ||| Sbjct 76927 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAACGTT 76986 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 | |||||||||| ||| ||||| || | |||||| |||| ||||||| | || || Sbjct 76987 AGACCTGGCATTAGACCCCTTTTCTTTAGCCAAAAGATTG-AGCAAAAGCTGCAAAA 77042 >seq756854 Length=32667 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||| |||||||| | ||||||||||| || | |||||| || || ||| Sbjct 29271 AAGCAGGCAAAGTCACAATGAAGGCCTTCATCTCTTGAAATGAGTTCATTTGACAATGTT 29212 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 | |||||||||| ||| ||||| || | |||||| |||| ||||||| | || || Sbjct 29211 AGACCTGGCATTAGACCCCTTTTCTTCAGCCAAAAGATTG-AGCAAAAGCTGCAAAA 29156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583160581806600