Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq308694 122 4e-23 seq773576 114 6e-21 >seq308694 Length=301 Score = 122 bits (134), Expect = 4e-23 Identities = 198/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 68315 TTATAAGCCCAAACAGAAATGACTGAGAAGTCTGCGGTTTCCTTGTCTGAGGTGGCGAAG 68374 ||||| ||||| || || ||||| |||||||| || | | |||| || || || ||| Sbjct 6 TTATAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAAG 65 Query 68375 TCCGTGGTGATGTAGAAGTTAAACTTGCCCTGGTTCTTCAGCAGGTTCTTCCGCTCATAC 68434 || |||||||||||||||||||| ||| ||||||||| | | | || | || Sbjct 66 TCAGTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAGAATAGAATCCAACTTAAAC 125 Query 68435 CACTGGATGTCGTCGTCCTGAATAATACGCTCCTCGTCGGACGAGATGCGCAGCATCAGC 68494 || || || | || ||||| || || || || || ||| ||| || ||||| ||| Sbjct 126 CAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAGC 185 Query 68495 TCCTGGTTGAATGCCGCCAGCTTCCCGTTCTTCAGGGACGTCTCGTATTCATCGAGGATG 68554 ||||||||||| | ||| || |||||| || | | || || ||||| || | Sbjct 186 TCCTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGACG 245 Query 68555 AACTCATAGGTGAAGCGGTCTTCCCAGGCTCCCCGGAATTCTTCC 68599 ||||||| ||||| || || ||||| || | ||| |||||| Sbjct 246 TACTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCC 290 >seq773576 Length=412 Score = 114 bits (126), Expect = 6e-21 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55345 GCATCGATACCCTGGTCGTTTACGTTACGGTCATCCAGCAGTGGGATGTAGTGGTAAACG 55404 ||||| ||||| |||||||| | ||| |||||||||||| |||||||||||| | Sbjct 216 GCATCAATACCTTGGTCGTTGATGTTGGCGTCATCCAGCAGGGGGATGTAGTGGAACTTC 275 Query 55405 CGGATTTCTTTGCCGTAGTTCTTAGGCATAGAAACAACGTCTGCCAGCGGCATAAAGTAT 55464 ||| | || ||| ||||||| ||||||||| || || || ||| || ||||||| Sbjct 276 TTGATCTTCTTACCGAAGTTCTTCGGCATAGAAGTCACATCAGCAAGCTGCTGAAAGTAT 335 Query 55465 TGGTCTTTACGCGCTTCAATGAGAGCTT 55492 || |||||||| |||||||| | ||||| Sbjct 336 TGCTCTTTACGAGCTTCAATCAAAGCTT 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235216599950950