Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq861945 120 8e-23 seq1056392 118 3e-22 >seq861945 Length=7612 Score = 120 bits (132), Expect = 8e-23 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22024 CGCCTACAACGCTCTCGACCCGACCGCGCCGGACTTCTATAAGCCCAGCACATGGTGGGT 22083 || ||||||| | |||||||||| | | ||||||| |||||| | |||||| | Sbjct 476 CGACTACAACTCGATCGACCCGACGAAGGAGAACTTCTACAAGCCCTCGTCCTGGTGGAT 417 Query 22084 GTTGGGGCGGGAGATGCACGCTTCGCGCCTGCTGACCATCATAACCCGCCCGCTGCCGGA 22143 | | || ||| ||||||| |||| ||| | || |||| | |||||| || |||| Sbjct 416 GATCGGCACCGAGGTGCACGCGACGCGTCTGTTCACGCTCATCAGCCGCCCCGTGGCGGA 357 Query 22144 CATGCTCAAGCCTGCCTATAACTTCTCTGGGATCTCAATGTCCCAGCTGGCACAGCCCTA 22203 |||||||||||| |||||| ||| || ||| ||| | ||||| || ||||| Sbjct 356 CATGCTCAAGCCGGCCTATTCGTTCCGCGGCATCAGCATGACGCAGCTTGCGATTCCCTA 297 Query 22204 CGTTGAGAACTGGTTGCGCACCCGGCAATCCGTC 22237 ||| || |||||| ||||||| || ||||||||| Sbjct 296 CGTGGACAACTGGCTGCGCACGCGCCAATCCGTC 263 >seq1056392 Length=5075 Score = 118 bits (130), Expect = 3e-22 Identities = 95/114 (83%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 27174 CCGGCATCCCGGCGTTCCTGACCACCTACATCGACCCGAAAATGATCGAGGTACTGGTTG 27233 ||||||||||||||| |||||| |||||| |||| |||||| | |||||||| ||||||| Sbjct 4863 CCGGCATCCCGGCGTACCTGACGACCTACGTCGATCCGAAAGTCATCGAGGTGCTGGTTG 4922 Query 27234 CCCCGATCAAGGCAGCCGAGGCAGTCGGTTCCGAGGTGAAGAAAGGCGACTGGA 27287 | ||||| ||||| ||||| ||||| |||| ||||||||||||||||| Sbjct 4923 CACCGATGAAGGCCGCCGAAATCGTCGG---CGAGTCGAAGAAAGGCGACTGGA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137196781842490