Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq976086 343 3e-90 >seq976086 Length=346 Score = 343 bits (380), Expect = 3e-90 Identities = 285/346 (82%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 24784 TTGAGGTTGTTACTCATCCGGGGATACTCCGCTGCGCATCAGGGCTTTGTGCCGCCAGTC 24843 |||||||| || ||||||||||| | ||||||| || || | |||||| ||||||||||| Sbjct 3 TTGAGGTTATTGCTCATCCGGGGTTGCTCCGCTTCGGATAAAGGCTTTATGCCGCCAGTC 62 Query 24844 CAGTAACTCGGCCAGCGGCATGTCGTACATTTCAGACGGGGGCCAGTGAAAGATGACCGC 24903 | | |||||||||||||||||||||||| || || || |||||||||| || | || Sbjct 63 AATCAGCTCGGCCAGCGGCATGTCGTACATCTCGGAGGGTTGCCAGTGAAATATCATGGC 122 Query 24904 AACGTCGGCCATCAGGTCATTCACGGTCAGGCTTCGGGGCCAGTCTTGTCGGCCGACTTC 24963 || |||||||||||||| || || ||||||| | ||||||||| ||| |||||||| Sbjct 123 AATATCGGCCATCAGGTCGTTGACCGTCAGGCCGTGCGGCCAGTCTATTCGTCCGACTTC 182 Query 24964 GGCAACAAAAAACCGATCACTTTCCCGCCCAGCGTAATCAGGTCAACCGGATC--GAGGT 25021 | | ||||||||||||||| || |||||||||| ||||||||| |||||||| ||| Sbjct 183 GACTGCAAAAAACCGATCACCTTTCCGCCCAGCGCAATCAGGTCTACCGGATCAAGAGCA 242 Query 25022 TTAGGCACTCTGATTTCGTCAGTGCAGGCAGGGTAATGCGCGGCAGCACGGACAGCAGGG 25081 ||| ||||| | || |||||||| |||||||||||||| |||||||||| ||||||| Sbjct 243 TTA--CACTCGGCCTTTGTCAGTGCTGGCAGGGTAATGCGGGGCAGCACGGTGAGCAGGG 300 Query 25082 CGTCCACGTCCGAGGCGCACAGGTCAGCCAGCCGCACGCCGCGCAG 25127 |||| |||||||| ||||||||| ||||| |||||||||||||| Sbjct 301 CGTCAACGTCCGACTGGCACAGGTCGGCCAGGCGCACGCCGCGCAG 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93095676709980