Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_020848.1 Length=76705 Score E Sequences producing significant alignments: (Bits) Value seq308694 131 8e-26 seq190956 131 8e-26 seq1028318 107 9e-19 seq773576 86.0 3e-12 >seq308694 Length=301 Score = 131 bits (144), Expect = 8e-26 Identities = 209/295 (71%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 57958 TATGCCCAAACAGAAATAACAGAGAAGTCATTGTGTTTCTCGGCACCTGTTGCAAAGTCG 58017 || ||||| || || || |||||||||||| | | || | | || |||||||| Sbjct 9 TAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAAGTCA 68 Query 58018 GTAGTGATATAGAAGTTGTAGTCG-TCCTTCTTCTCTAAGAGT-GTGTTTCTCTTGTACC 58075 || ||||| |||||||| | ||| ||||| |||| | ||| | | | ||| ||| Sbjct 69 GTGGTGATGTAGAAGTT-AAATCGTTCCTTGTTCT-TCAGAATAGAATCCAACTTAAACC 126 Query 58076 AACTAATGTCACAGTCGAGTATGAGACGATCCTCATCTGACATGATGCGAAGCATAAGTT 58135 ||| ||| |||| || | || | ||||| || || |||||||| || ||||| || | Sbjct 127 AACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAGCT 186 Query 58136 CTTGGTTGAAAGTGTCCGCTTTACCAGTCTTGATCGCAATGTCGTACTGTTCTTTGACAT 58195 | |||||||| || ||| | |||| |||| || || |||| |||| || |||| | Sbjct 187 CCTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGACGT 246 Query 58196 AGTCGTATGTGAAACGGTCAGGCCAAGACCCACGAAAGTCTTCTCTGGCGCAGGG 58250 | || || |||||||| |||||||| || || | |||||||| ||| ||| || Sbjct 247 ACTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCCTTGGAGCAAGG 301 >seq190956 Length=351 Score = 131 bits (144), Expect = 8e-26 Identities = 143/188 (76%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 21038 AAGTGGGCGATTGGATTGTCTCAGGTCAGTTTGACTTTGTTGGGGACGGGAGACTGGAAG 21097 |||| ||| | |||| |||| ||||| |||||||||||||||| || || || | |||| Sbjct 65 AAGTAGGCAAATGGACTGTCACAGGTAAGTTTGACTTTGTTGGTGATGGAAGGGTTGAAG 124 Query 21098 ACTTTAAGTCTACTG--GTACTTTTACTTGGACCAAGGGCAACAAAGATCAAGACTACAT 21155 |||| ||||| ||| ||| | || | | |||||||||||||||||||| || Sbjct 125 ACTTCAAGTCCACTTCAGTATGGT--CTGCAATCTCTGGCAACAAAGATCAAGACTATAT 182 Query 21156 TGACCAAGGCAGCATTTACCGCTGGGGCCGACCAGACATCATTACTCAAGATGTACTGGC 21215 ||||||| ||||| || |||||| || |||||||| ||||| ||||| | |||| Sbjct 183 CTACCAAGGAAGCATCTATCGCTGGCTTCGTCCAGACATTATTACCAAAGATCAAATGGC 242 Query 21216 TATTCAGT 21223 |||||||| Sbjct 243 TATTCAGT 250 >seq1028318 Length=438 Score = 107 bits (118), Expect = 9e-19 Identities = 202/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 24923 ATAGGAGTACTAATGACTCAACAAGTAAACGACAACCTAGTGTTGCTTGTAGGTAAGTCA 24982 |||||| ||| ||| ||||| || ||| | || || ||||| ||||| ||||| Sbjct 328 ATAGGAAAACTCATGTCTCAAACC---AATGACCATCTGGTATTGCTCGTAGGCAAGTCT 272 Query 24983 GCAGCAGGTAAATCTGCTTCCCTAATGAACTTACCGAACCCTGAAGGCGTGATGTACTTG 25042 || | || ||||| || || || | ||| | ||| || ||||| |||||||| || Sbjct 271 GCTACTGGCAAATCAGCATCTCTCCTTAACCTTGAGAAGCCAGAAGGAGTGATGTATCTG 212 Query 25043 AACTGTGAGGCTGGCAAGAAGCTGCCATTCCGAAGCAAGTTTAAGGAATTCACAATCACA 25102 ||||||||| |||||||| |||| ||| ||||||||| | | | || || | || Sbjct 211 AACTGTGAGAACGGCAAGAAATTGCCTTTCAAAAGCAAGTTCATGCAGTTGACGGTTACC 152 Query 25103 GA-CCCTCTACAGGTAGAAGAAGCATTCATGGCTGCTGAGAATATGCCTGACATTCATAC 25161 || |||| | ||| | ||||| ||| | ||||| | ||| || || ||||| Sbjct 151 GATCCCTAT-CAGCTTTTTGAAGCCTTCCAAGTGGCTGAATCAAAGCCAGAGATCCATAC 93 Query 25162 CATTGTGGTAGACAGCTTAACCTACATGATGGATATGTATGAATCAGTATACGT 25215 ||| || | ||||| | ||||| | ||||||||| ||| || |||| || Sbjct 92 CATCGTCATCGACAGTCTGACCTATCTTCTGGATATGTTTGAGTCCATATATGT 39 >seq773576 Length=412 Score = 86.0 bits (94), Expect = 3e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 43771 GCATCGATACCTTGGTCGTTGATGTTACGGTCATCAAGCAGCGGTAGGTAGTGGTACTGT 43830 ||||| |||||||||||||||||||| |||||| ||||| || | ||||||| ||| Sbjct 216 GCATCAATACCTTGGTCGTTGATGTTGGCGTCATCCAGCAGGGGGATGTAGTGGAACTTC 275 Query 43831 TTAATTGTTTTACCGAAATGCTTAGGCATCGCAGTAGCATCTGCCA-TTGGAGAGAACAC 43889 || || | |||||||| | ||| ||||| | ||| |||| || | || || | | Sbjct 276 TTGATCTTCTTACCGAAGTTCTTCGGCATAGAAGTCACATCAGCAAGCTGCTGAAAGTAT 335 Query 43890 TGCTTCTTTAGCGATC-TCAATAAGGGCACGTTTTTTGTAGTAATCCGTACGGATCTGTG 43948 ||| |||||| ||| | ||||| | || |||| | || || | | |||||| | Sbjct 336 TGC-TCTTTA-CGAGCTTCAATCAAAGCTTGTTTCTGATAATACTGAACATTGATCTGAG 393 Query 43949 GACCAATACTTGA 43961 ||||||| || || Sbjct 394 GACCAATGCTAGA 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241633603803290