Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_020849.1 Length=76802 Score E Sequences producing significant alignments: (Bits) Value seq308694 129 3e-25 seq1028318 114 6e-21 >seq308694 Length=301 Score = 129 bits (142), Expect = 3e-25 Identities = 213/303 (70%), Gaps = 12/303 (4%) Strand=Plus/Plus Query 73632 GTTATATGCCCATACAGAAATAACAGAGAAGTCATTATGCTTTTCTGCT-----CCTGTA 73686 |||||| ||||| || || || |||||||||||| || |||||||| ||| Sbjct 5 GTTATAGGCCCAGACTGAGATGACAGAGAAGTCA----GC-TTTCTGCTTGATAGAAGTA 59 Query 73687 GCAAAGTCAGTTGTAATATAAAAGTTATATTGCTCTCTCTTACTTAAG-AGGGTGTTTCT 73745 ||||||||||| || || || |||||| || | || || | ||| || | | | Sbjct 60 GCAAAGTCAGTGGTGATGTAGAAGTTAAATCGTTC-CTTGTTCTTCAGAATAGAATCCAA 118 Query 73746 TTTGTACCAACTAATGTCACAGTCGTGTATGAGGCGATCCTCATCTGACATGATGCGAAG 73805 || |||||| ||| |||| || || || | |||||| || || |||||||| || || Sbjct 119 CTTAAACCAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAG 178 Query 73806 CATAAGCTCTTGGTTAAAAGTGTCTGCTTTACCGGTCTTGATCGCAATGTCGTACTGTTC 73865 ||| ||||| ||||| || || || | ||| |||| || || |||| |||| || Sbjct 179 CATTAGCTCCTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATC 238 Query 73866 TTTGACATAGTCGTATGTGAAACGGTCAGGCCAAGACCCACGAAAGTCTTCTCTGGGGCA 73925 |||| || || || |||||||| |||||||| || || | |||||||| ||| ||| Sbjct 239 CCTGACGTACTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCCTTGGAGCA 298 Query 73926 GGG 73928 || Sbjct 299 AGG 301 >seq1028318 Length=438 Score = 114 bits (126), Expect = 6e-21 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 39150 TGCTTGTAGGAAAATCAGCAGCTGGTAAATCAGCATCGCTAATGAATCTTCCAAATCCAG 39209 |||| ||||| || || || |||| ||||||||||| || | || ||| || |||| Sbjct 288 TGCTCGTAGGCAAGTCTGCTACTGGCAAATCAGCATCTCTCCTTAACCTTGAGAAGCCAG 229 Query 39210 AAGGTGTAATGTATTTAAACTGTGAGGCAGGTAAGAAGTTACCTTTCCGAAGCAAGTTTA 39269 |||| || |||||| | ||||||||| || ||||| || |||||| ||||||||| | Sbjct 228 AAGGAGTGATGTATCTGAACTGTGAGAACGGCAAGAAATTGCCTTTCAAAAGCAAGTTCA 169 Query 39270 AAGAATTTACAATTACAGACCCTCTTCAAATTGAAGAAGCGTTTATGGCTGCTGAGAACA 39329 | || || |||| || || ||| || ||||| || | ||||| | Sbjct 168 TGCAGTTGACGGTTACCGATCCCTATCAGCTTTTTGAAGCCTTCCAAGTGGCTGAATCAA 109 Query 39330 TGCCAGATGTTCATACTATCGTTGTGGATAGTCTGACTTACATGATGGATATGTATGAAT 39389 |||||| | ||||| ||||| | || |||||||| || | ||||||||| ||| | Sbjct 108 AGCCAGAGATCCATACCATCGTCATCGACAGTCTGACCTATCTTCTGGATATGTTTGAGT 49 Query 39390 CTGTATATGTACTA-ACTGCTGCAAAT 39415 | ||||||| ||| | || |||||| Sbjct 48 CCATATATGT-CTATAAGGCAGCAAAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241939325499595