Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_020862.2 Length=74485 Score E Sequences producing significant alignments: (Bits) Value seq308694 114 6e-21 seq248684 93.3 2e-14 >seq308694 Length=301 Score = 114 bits (126), Expect = 6e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 1599 ATAACTTCAGACAAGAGCTTATGCTTCGCATTACATCTGATGAAGCTCGTTTGGTTCAAG 1658 ||| ||||| || ||||| ||||| || || | ||||| |||| ||| || |||||| Sbjct 201 ATACCTTCAACCAGGAGCTAATGCTACGAATCATGTCTGAAGAAGATCGCATGATTCAAG 142 Query 1659 AGGCTGATATTGGTTGGTATTCCAGACAGCACATCCTCAAGAACAAAGAGAAGTATAACT 1718 | | |||||||||||||| | | || || |||||||| || | ||||| Sbjct 141 ATGGTGATATTGGTTGGTTTAAGTTGGATTCTATTCTGAAGAACAAGGAACGATTTAACT 82 Query 1719 TCTACATCACCACTGACTTTGCCACATC-ATCCAGACAAACTGCTGACTACTCTGTGTTG 1777 |||||||||||||||||||||| || || ||| || || | ||||||| |||||| | Sbjct 81 TCTACATCACCACTGACTTTGCTACTTCTATCAAG-CAGAAAGCTGACTTCTCTGTCATC 23 Query 1778 TCAGTATGGGCTTAT 1792 ||||| ||||| ||| Sbjct 22 TCAGTCTGGGCCTAT 8 >seq248684 Length=652 Score = 93.3 bits (102), Expect = 2e-14 Identities = 227/340 (67%), Gaps = 12/340 (4%) Strand=Plus/Plus Query 36096 TCATGTTCATAGGCATACCAGTAAGCTGCATCTGGATAATATCTACAACACT-GTCTTTG 36154 || ||||||||||||| ||||| | | | ||| ||||| || | | | ||| | Sbjct 100 TCCTGTTCATAGGCATGCCAGTCATTTCAAGCTGAATAAT-----CAGCTTTTGACTTGG 154 Query 36155 AA----CAGACCTTTGTAGATTTCCTCTTGCTGGTCTTTTACCATAGTAGGGTAATGTTT 36210 | ||||| ||||| | |||||||| || ||| ||||| | || | | || Sbjct 155 CATCATCAGACTCTTGTACAGATCCTCTTGTTGATCTGCAACCATGATGGGTTGGTACTT 214 Query 36211 ATTGAAAACATACCATGTGGAAAGTCCATCAATAAGGTTATATTTCAACAGCTTAGGCAG 36270 || |||||||| ||||| | | |||| | ||||| |||| | ||| ||| || Sbjct 215 CTTCTTTACATACCAGGTGGACAATGCATCCACTAGGTTGTATTGAAGCAGTTTATCCAA 274 Query 36271 AGGAAT-TAATGTGATATCTTTGATATCTTCCACTGCATAGTTACCTGCAAACTCTTGAG 36329 ||||| | | | |||||| | || ||||| || || | || || |||||||| |||| Sbjct 275 GGGAATCTTACG-GATATCCTGAATCTCTTCTACAGCCCAATTGCCAGCAAACTCATGAG 333 Query 36330 CCTGAACCTTCAAACCAAGCTGATTACCTGCACATGAGTTTGTAGCTAGGTATGTGATAA 36389 || | |||||||||||| |||||||||| || ||||| || |||| || | Sbjct 334 CCAAAGGCTTCAAACCAAGAACATTACCTGCAGTGCTATTGGTAGCCAGATATGCAATGA 393 Query 36390 TCTGGGAGCATTCCCAGTTTCTCAGCATGATTTCCAGACC 36429 | || | ||| |||||| |||||| |||| ||| Sbjct 394 CTTTGGTGTCATCCATGTTTCTGGTCATGATATCCAAACC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234636674258990