Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_020868.1 Length=76718 Score E Sequences producing significant alignments: (Bits) Value seq308694 131 8e-26 seq190956 131 8e-26 seq1028318 107 9e-19 seq773576 86.0 3e-12 >seq308694 Length=301 Score = 131 bits (144), Expect = 8e-26 Identities = 209/295 (71%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 25155 CCCTGCGCCAGAGAAGACTTTCGTGGGTCTTGGCCTGACCGTTTCACATACGACTATGTC 25214 || ||| ||| |||||||| | || || |||||||| |||||||| || || || ||| Sbjct 301 CCTTGCTCCAAGGAAGACTTCAGAGGTTCCTGGCCTGATCGTTTCACGTATGAGTACGTC 242 Query 25215 AAAGAACAGTACGACATTGCGATCAAGACTGGTAAAGCGGACACTTTCAACCAAGAACTT 25274 | || |||| |||| || || |||| |||| | ||| || |||||||| || || Sbjct 241 AGGGATGAGTATGACAAGGCCATGAAGAGTGGTCGTGTGGATACCTTCAACCAGGAGCTA 182 Query 25275 ATGCTTCGCATCATGTCAGATGAGGATCGTCTCATACTCGACTGTGACATTAGTTGGTAC 25334 ||||| || |||||||| || || ||||| | || | || |||| ||| |||||| Sbjct 181 ATGCTACGAATCATGTCTGAAGAAGATCGCATGATTCAAGATGGTGATATTGGTTGGTTT 122 Query 25335 AAGAGAAACAC-ACTCTTAGAGAAGAAGGA-CGACTACAACTTCTATATCACTACCGACT 25392 ||| | | | ||| | |||| ||||| ||| | |||||||| ||||| || |||| Sbjct 121 AAGTTGGATTCTATTCTGA-AGAACAAGGAACGATTT-AACTTCTACATCACCACTGACT 64 Query 25393 TTGCAACAGGTGCCGAGAAACACAATGACTTCTCTGTTATTTCTGTTTGGGCATA 25447 |||| || | | || | | |||||||||||| || || || ||||| || Sbjct 63 TTGCTACTTCTATCAAGCAGAAAGCTGACTTCTCTGTCATCTCAGTCTGGGCCTA 9 >seq190956 Length=351 Score = 131 bits (144), Expect = 8e-26 Identities = 143/188 (76%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 62203 ACTGAATAGCCAGTACATCTTGAGTAATGATGTCTGGTCGGCCCCAGCGGTAAATGCTGC 62262 |||||||||||| | ||||| ||||| |||||||| || |||||| || ||||| | Sbjct 250 ACTGAATAGCCATTTGATCTTTGGTAATAATGTCTGGACGAAGCCAGCGATAGATGCTTC 191 Query 62263 CTTGGTCAATGTAGTCTTGATCTTTGTTGCCCTTGGTCCAAGTAAAAGTAC--CAGTAGA 62320 |||||| || |||||||||||||||||||| | | || | ||| ||| || Sbjct 190 CTTGGTAGATATAGTCTTGATCTTTGTTGCCAGAGATTGCAG--ACCATACTGAAGTGGA 133 Query 62321 CTTAAAGTCTTCCAGTCTCCCGTCCCCAACAAAGTCAAACTGACCTGAGACAATCCAATC 62380 ||| |||||||| | || || || |||||||||||||||| ||||| |||| |||| | Sbjct 132 CTTGAAGTCTTCAACCCTTCCATCACCAACAAAGTCAAACTTACCTGTGACAGTCCATTT 73 Query 62381 GCCCACTT 62388 ||| |||| Sbjct 72 GCCTACTT 65 >seq1028318 Length=438 Score = 107 bits (118), Expect = 9e-19 Identities = 202/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 58211 ACGTATACTGATTCATACATATCCATCATGTAGGTTAAGCTGTCTACCACAATGGTATGA 58270 || |||| || ||| ||||||||| | ||||| | ||||| | || |||||||| Sbjct 39 ACATATATGGACTCAAACATATCCAGAAGATAGGTCAGACTGTCGATGACGATGGTATGG 98 Query 58271 ATGTCAGGCATATTCTCAGCAGCCATGAATGCTTCTTCTACCTGTAGAGGG-TCTGTGAT 58329 || || ||| | ||||| | ||| ||||| | ||| | |||| || || | Sbjct 99 ATCTCTGGCTTTGATTCAGCCACTTGGAAGGCTTCAAAAAGCTG-ATAGGGATCGGTAAC 157 Query 58330 TGTGAATTCCTTAAACTTGCTTCGGAATGGCAGCTTCTTGCCAGCCTCACAGTTCAAGTA 58389 || || | | | ||||||||| ||| |||| |||||||| ||||||||||| || Sbjct 158 CGTCAACTGCATGAACTTGCTTTTGAAAGGCAATTTCTTGCCGTTCTCACAGTTCAGATA 217 Query 58390 CATCACGCCTTCAGGGTTCGGTAAGTTCATTAGGGAAGCAGATTTACCTGCTGCTGACTT 58449 |||||| ||||| || ||| | ||| | || || || ||||| || | || ||||| Sbjct 218 CATCACTCCTTCTGGCTTCTCAAGGTTAAGGAGAGATGCTGATTTGCCAGTAGCAGACTT 277 Query 58450 ACCTACAAGCAACACTAGGTTGTCGTTTACTTGTTGAGTCATTAGTACTCCTAT 58503 ||||| ||||| || || | ||| || ||||| ||| ||| |||||| Sbjct 278 GCCTACGAGCAATACCAGATGGTCATT---GGTTTGAGACATGAGTTTTCCTAT 328 >seq773576 Length=412 Score = 86.0 bits (94), Expect = 3e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39465 TCAAGTATTGGTCCACAGATCCGTACGGATTACTACAAAAAACGTGCCCTTATTGA-GAT 39523 || || |||||||| |||||| | | || || | |||| || | ||||| | | Sbjct 406 TCTAGCATTGGTCCTCAGATCAATGTTCAGTATTATCAGAAACAAGCTTTGATTGAAGCT 347 Query 39524 CGCTAAAGAAGCAGTGTTCTCTCCAA-TGGCAGATGCTACTGCGATGCCTAAGCATTTCG 39582 || |||||| ||| | | || || | || |||| ||| | ||||| ||| | |||| Sbjct 346 CG-TAAAGA-GCAATACTTTCAGCAGCTTGCTGATGTGACTTCTATGCCGAAGAACTTCG 289 Query 39583 GTAAAACAATTAAACAGTACCACTACCTACCGCTGCTTGATGACCGTAACATCAACGACC 39642 |||| | || || ||| ||||||| | || ||||| |||||| ||||||||||||| Sbjct 288 GTAAGAAGATCAAGAAGTTCCACTACATCCCCCTGCTGGATGACGCCAACATCAACGACC 229 Query 39643 AAGGTATCGATGC 39655 ||||||| ||||| Sbjct 228 AAGGTATTGATGC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241674576814135