Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq57986 104 4e-16 seq496631 95.1 2e-13 seq601725 91.5 2e-12 seq212161 86.0 1e-10 >seq57986 Length=1665139 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| |||||||||||||| ||||| || || |||||| |||| ||||||||| ||| Sbjct 907775 TGAACTTCGTGACGGCCTTGGTGCCCTCAGAAACCGCGTGCTTGGCAAGTTCGCCGGGCA 907716 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| |||| ||||| ||||| || | || || ||||||| || Sbjct 907715 GAACAAGGCGCGCGGCCGTCTGAATCTCTCGAGACGTAATTGTAGGCTTCTTGTTATAGC 907656 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | | || | | ||||| || | || || | || ||||| | || || ||| Sbjct 907655 GAGAGAGCTTGGCAGCCTC-TTGAGCAAGCTTTTCAAAGATATCGTTAATGAAGGAATTC 907597 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||| || || | |||||||| | |||||||||||||||| Sbjct 907596 ATGATGCCCATGGCCTTGCTGGATATACCAATATCGGGGTGAATCTGCTTGAGCACCTTG 907537 Query 1485709 TAAA 1485712 ||| Sbjct 907536 AAAA 907533 >seq496631 Length=1500188 Score = 95.1 bits (104), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1485628 ATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGG 1485687 || || ||||||||||| |||||||| ||||| || ||| |||| ||||| | ||| ||| Sbjct 704687 ATATCATTGACAAACGAATTCATGATGGACATAGACTTGCTGGAAATGCCAATGTCAGGG 704628 Query 1485688 TGCACCTGCTTGAGCACCTTGTAAACA 1485714 || |||||||| || |||||||||||| Sbjct 704627 TGAACCTGCTTCAGAACCTTGTAAACA 704601 >seq601725 Length=638466 Score = 91.5 bits (100), Expect = 2e-12 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||||||||||||||| || ||| |||| ||||| || | | || Sbjct 148545 ACTTGGTCACAGCCTTGGTACCCTCTGAGACAGCATGCTTGGCGAGTTC-CCCTGGAAGA 148487 Query 1485533 TC-AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || || || ||||| ||||| || | | ||| ||| |||||| ||| Sbjct 148486 GCAAGTCGTACAGCAGTCTGAATCTCCCGCGAGGTGATTGTGGGCTTCTTGTTGTAGCGG 148427 Query 1485592 GCCAGGCGGCCGGCCTCG-GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 || || |||||| |||| || || | || || |||| || |||||||| Sbjct 148426 GCAAGCTTCGATGCCTCGCTTGCCAAT-TTTTCAAAAATATCATTGATGAAAGAGTTCAT 148368 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| |||| || || | ||| ||||| ||||| ||||| |||||| Sbjct 148367 AATTCCCATGGCCTTGCTGGAAATACCAATGTCAGGGTGAACCTGTTTGAGAACCTTG 148310 >seq212161 Length=320228 Score = 86.0 bits (94), Expect = 1e-10 Identities = 167/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || |||||||| || |||||||||||||| ||| | || || || || | | Sbjct 25495 TGAACTTTGTCACGGCCTTAGTGCCCTCTGAGACGGCATGCTTTGCAAGCTCCCCTGGGA 25436 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || | ||| |||||||| ||||| || | || ||| |||||| || Sbjct 25435 GCGCAAGCCTCACAGCGGTCTGAATCTCCCGAGAAGTAATGGTGGGCTTCTTGTTGTAGC 25376 Query 1485590 GCGCCAGGCGGCCGGCCTCGGT-GCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||| || | |||||| | ||| || || | ||||| |||| || |||| Sbjct 25375 GCGCGAGTCTCGATGCCTCGCTCGCCAAT-TTCTCAAAAATGTCATTGATGAAACTGTTC 25317 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||| || || | ||||||||| |||||||| || |||||| Sbjct 25316 ATGATTCCCATGGCCTTGCTGGAAATACCAATGTCGGGGTGGACCTGCTTCAGAACCTTG 25257 Query 1485709 TAAA 1485712 ||| Sbjct 25256 AAAA 25253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7784696703520935