Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq728981 150 4e-32 >seq728981 Length=317 Score = 150 bits (166), Expect = 4e-32 Identities = 200/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 |||||| |||||||| ||||| | || | ||| | ||| || |||| || || | || Sbjct 40 GTTATAGAACATTTCAATGTAGTTGAAGACATCGCTGCGGGCATCTTGCCGGGTGGCATA 99 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792 | | | ||| || |||||||| || | |||||| ||||| |||||||| ||||| Sbjct 100 GGTTCTACGACGTATGCGCTCACGTTTGAGCAACTGGAAGAAACTCTCTGCGACAGCGTT 159 Query 18793 GTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGA 18852 |||||| ||||| || || |||||||| ||| || ||| ||| || ||||| Sbjct 160 GTCATGGCAGTTGCCCCGTCGGCTCATGCTGGGCTGCAGTTTGTGGCTCTTGAGGAAGTC 219 Query 18853 CTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTG 18912 |||||| |||| ||| ||| | || | ||| || || ||||||||||||||| ||| Sbjct 220 CTGCCATTCATGGCTAGTGAATTGGCAGCCCTGGTCGGAATGAACCAGCACCGTCTTGCT 279 Query 18913 AGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCA 18950 || | || ||||| ||||||||||| | |||| || Sbjct 280 GGGCCTGCGCCGCCAGACGGCCATCAGCAACGCATCCA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125237427315600