Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq878211 107 3e-18 seq1193952 87.8 3e-12 seq678061 87.8 3e-12 seq304998 87.8 3e-12 seq842679 86.0 1e-11 >seq878211 Length=3116 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 || || || || || || || || ||| | || || ||| | || |||||| | ||| Sbjct 1093 AAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAAT 1152 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 || || || || ||| || ||||| || ||||| || ||||||||| | || ||| Sbjct 1153 GTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 1212 Query 146166 GCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCG 146225 || ||||| ||||| || || |||||| || | || || || || ||||||||||| Sbjct 1213 GCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAATCC 1272 Query 146226 ACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||| | || ||||| || |||| ||||| |||| Sbjct 1273 ACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTA 1306 >seq1193952 Length=303220 Score = 87.8 bits (96), Expect = 3e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | ||||| | || || || || || ||| | || || || | | | Sbjct 185406 TGCAGATTTTTGTGAAAACCCTTACTGGCAAGACGATAACTTTGGAAGTCGAGAGCTCA- 185464 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || || || ||||||||||||||| || || || Sbjct 185465 GATACCATTGATAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACCAG 185524 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || |||||||||||||||||| | || ||| | || || | |||||||| Sbjct 185525 CAGAGGCTTATTTTTGCAGGTAAACAACTGGAGGATGGCCGTACCTTGGCTGATTATAAC 185584 Query 146211 ATACAAAAAGAATCGAC 146227 || || || |||||||| Sbjct 185585 ATTCAGAAGGAATCGAC 185601 >seq678061 Length=572976 Score = 87.8 bits (96), Expect = 3e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | ||||| | || || || || || ||| | || || || | | | Sbjct 353402 TGCAGATTTTTGTGAAAACCCTTACTGGCAAGACGATAACTTTGGAAGTCGAGAGCTCA- 353460 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || || || ||||||||||||||| || || || Sbjct 353461 GATACCATTGATAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACCAG 353520 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || |||||||||||||||||| | || ||| | || || | |||||||| Sbjct 353521 CAGAGGCTTATTTTTGCAGGTAAACAACTGGAGGATGGCCGCACCTTGGCTGATTATAAC 353580 Query 146211 ATACAAAAAGAATCGAC 146227 || || || |||||||| Sbjct 353581 ATTCAGAAGGAATCGAC 353597 >seq304998 Length=937332 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || |||||||||||||| | || || || | Sbjct 595662 TGCAGATCTTTGTTAAAACTCTCACTGGAAAAACAATTACATTGGAAGTTGAGAGCTCGG 595721 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| || || || || ||||| |||||||| || || | Sbjct 595722 ACACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCTGACCAGC 595781 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || || |||||||| || | || ||| || || || | |||||||||| Sbjct 595782 AGAGGCTTATCTTCGCAGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTATAATA 595841 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||||||||| | ||| | || | || |||||||||| Sbjct 595842 TTCAGAAAGAATCGACCCTGCATCTGGTGCTTCGTCTAAGAGGAGG 595887 >seq842679 Length=263869 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || || || || || |||| || || | Sbjct 131445 TGCAAATCTTTGTCAAAACGCTGACCGGCAAGACCATCACGCTTGAAGTTGAGAGCTCTG 131386 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || |||||| || ||||||||||||||||| ||||||| Sbjct 131385 ATACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAAC 131326 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || || | || ||| | |||| | | ||||| || | Sbjct 131325 AGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGAACACTTGCTGATTACAACA 131266 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| || |||| Sbjct 131265 TTCAGAAGGAATCTACCCTCCA 131244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774013594111800