Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_023556.1 Length=72329 Score E Sequences producing significant alignments: (Bits) Value seq308694 127 9e-25 seq773576 105 3e-18 >seq308694 Length=301 Score = 127 bits (140), Expect = 9e-25 Identities = 208/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 67541 TTGTAAGCCCAGACAGAGATTACCGTGTAGTCGGCGGTCTGCTTGTCAGAGGTAGCAAAG 67600 || || |||||||| ||||| || | | |||| || |||||||| ||| ||||||||| Sbjct 6 TTATAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAAG 65 Query 67601 TCAGTGGTGATGTAGAAGTTGTACTGGCTCTTCATCCGCAGCAACTGCTGACGGC-TGTA 67659 |||||||||||||||||||| | | ||| || ||| || | | | | | Sbjct 66 TCAGTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAG-AATAGAATCCAACTTAAA 124 Query 67660 CCACTGAATCTCCCCTTCTTGCACCAGACGTTCTTCCTCGGACGTGATGCGCAGCATCAG 67719 ||| ||| || || ||||| | || || ||||| || ||| |||| || ||||| || Sbjct 125 CCAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAG 184 Query 67720 TTCCTGGTTGAAGCCTGAGACCTTGCCCGTCTTGACGGCCATGTCGTACTGGTCCTTGAC 67779 |||||||||||| || || |||| | |||| |||| |||| ||| |||| Sbjct 185 CTCCTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGAC 244 Query 67780 GTACTGGTAGCTGAAGCGATCTTCCCAGGCACCCACGAATTCTTCTTTGGGGCAGGG 67836 ||||| || |||| ||||| ||||| ||| ||| ||||| |||| ||| || Sbjct 245 GTACTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCCTTGGAGCAAGG 301 >seq773576 Length=412 Score = 105 bits (116), Expect = 3e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57737 ATGGTCACGCCGTTGGCGTCGATACCTTGGCTGTTGATGTTGCGGTCGTCCAGCAGCGGG 57796 ||||||||||| ||||| || ||||||||| |||||||||| ||| |||||||| ||| Sbjct 201 ATGGTCACGCCATTGGCATCAATACCTTGGTCGTTGATGTTGGCGTCATCCAGCAGGGGG 260 Query 57797 ACGTATTCGTAGACCTTGATGGTCTTGCCGAAGTGCTTCGGCATGTTGGTGACGTTGGCC 57856 | ||| | | | |||||| |||| ||||||| ||||||||| || || | || Sbjct 261 ATGTAGTGGAACTTCTTGATCTTCTTACCGAAGTTCTTCGGCATAGAAGTCACATCAGCA 320 Query 57857 AGCGGCATGAAGTACTGGTCTTTACG 57882 ||| || ||||| || |||||||| Sbjct 321 AGCTGCTGAAAGTATTGCTCTTTACG 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227841457998850