Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_023574.1 Length=128546 Score E Sequences producing significant alignments: (Bits) Value seq482539 100 2e-16 seq814033 89.7 4e-13 >seq482539 Length=482 Score = 100 bits (110), Expect = 2e-16 Identities = 89/110 (81%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 27923 GAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAGAATCAACACAA 27982 || ||| | ||| ||||||| | |||| |||| |||||| ||||||||||| |||| Sbjct 211 GAACTAATTGAAAAAGTAAAAGCTGAAACTCCACTAGAAACGACGAAAGAATCGGCACAG 270 Query 27983 GATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGGCAATAGAAAATGATT 28032 | ||||||||||||| | ||| |||||||||| | |||||||||||||| Sbjct 271 GCTTTCTTAGACTTAGC-GAAAGAACAAGGAAAAGTAATAGAAAATGATT 319 >seq814033 Length=989 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 27912 AACATGGTGGTGAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAG 27971 ||| || | |||| |||||||||||||| || |||| ||| | |||| ||||||| Sbjct 885 AACCTGATAGTGAACTAGTGGAAGAAGTGAAAAAGGAAACGCCAATCGAAACGACGAAAG 944 Query 27972 AATCAACACAAGATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGG 28017 |||| |||| | ||||||||||||| || ||| |||||||||||| Sbjct 945 AATCGGCACAGGCTTTCTTAGACTTAGCT-AAAGAACAAGGAAAGG 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405024515742955