Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_023579.1 Length=75568 Score E Sequences producing significant alignments: (Bits) Value seq308694 100 1e-16 seq248684 91.5 7e-14 >seq308694 Length=301 Score = 100 bits (110), Expect = 1e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 72667 GTTAAAGCCCCACACAAAGATAACCGAGTAGTCGGCTGTCTGTTTGGCTGAGGTGGCAAA 72726 |||| || |||| || |||| || ||| |||| ||| |||| ||| || || ||||| Sbjct 5 GTTATAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAA 64 Query 72727 GTCAGTGGTGATGTAGAAGTTGAATGTCTGCTGGTTCTCGATTAACAGTGACC-GGTCAT 72785 ||||||||||||||||||||| ||| | || ||||| | || || || | | Sbjct 65 GTCAGTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCA-GAATAGAATCCAACTTAA 123 Query 72786 ACCAACGCATATCCGAATCCTGAACCAGACGTTCCTCTTCAGAGGTAATGCGAAGCATCA 72845 |||||| ||||| ||| |||| || || || |||||||| | || || ||||| | Sbjct 124 ACCAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTA 183 Query 72846 GCTCCTGCATGAAG 72859 ||||||| ||||| Sbjct 184 GCTCCTGGTTGAAG 197 >seq248684 Length=652 Score = 91.5 bits (100), Expect = 7e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 30543 ACAGGCTTAGATGTGATGCTCAGAAACTGGGATGATACAAAGCTGATCACTTATCTGGCG 30602 || || || ||| | ||| ||||||| |||||| || || | || | |||||||| Sbjct 436 ACTGGTTTGGATATCATGACCAGAAACATGGATGACACCAAAGTCATTGCATATCTGGCT 377 Query 30603 ACGAATTCGTGTGCTGGAAACAAGTTAGGCTTGAAAGACCAGTCACAGGAATTTGCTGGC 30662 || ||| ||| || || | || ||||| | | || || ||||||||| Sbjct 376 ACCAATAGCACTGCAGGTAATGTTCTTGGTTTGAAGCCTTTGGCTCATGAGTTTGCTGGC 317 Query 30663 AACTATGCTGAGGAAGGTATTAAGGATATCCGTAATATCCCTCTGGATCAGCTGCTGCAA 30722 || | |||| |||| ||| ||||||||||||| || || ||||| | ||||| ||| Sbjct 316 AATTGGGCTGTAGAAGAGATTCAGGATATCCGTAAGATTCCCTTGGATAAACTGCTTCAA 257 Query 30723 TATAACCTCGTGGACGGTCTGTCAACGTGGTATGT 30757 || ||||| ||||| | |||| || |||||||| Sbjct 256 TACAACCTAGTGGATGCATTGTCCACCTGGTATGT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238050041239385